import time import joblib import numpy as np import pytest from numpy.testing import assert_array_equal from sklearn import config_context, get_config from sklearn.compose import make_column_transformer from sklearn.datasets import load_iris from sklearn.ensemble import RandomForestClassifier from sklearn.model_selection import GridSearchCV from sklearn.pipeline import make_pipeline from sklearn.preprocessing import StandardScaler from sklearn.utils.parallel import delayed, Parallel def get_working_memory(): return get_config()["working_memory"] @pytest.mark.parametrize("n_jobs", [1, 2]) @pytest.mark.parametrize("backend", ["loky", "threading", "multiprocessing"]) def test_configuration_passes_through_to_joblib(n_jobs, backend): # Tests that the global global configuration is passed to joblib jobs with config_context(working_memory=123): results = Parallel(n_jobs=n_jobs, backend=backend)( delayed(get_working_memory)() for _ in range(2) ) assert_array_equal(results, [123] * 2) def test_parallel_delayed_warnings(): """Informative warnings should be raised when mixing sklearn and joblib API""" # We should issue a warning when one wants to use sklearn.utils.fixes.Parallel # with joblib.delayed. The config will not be propagated to the workers. warn_msg = "`sklearn.utils.parallel.Parallel` needs to be used in conjunction" with pytest.warns(UserWarning, match=warn_msg) as records: Parallel()(joblib.delayed(time.sleep)(0) for _ in range(10)) assert len(records) == 10 # We should issue a warning if one wants to use sklearn.utils.fixes.delayed with # joblib.Parallel warn_msg = ( "`sklearn.utils.parallel.delayed` should be used with " "`sklearn.utils.parallel.Parallel` to make it possible to propagate" ) with pytest.warns(UserWarning, match=warn_msg) as records: joblib.Parallel()(delayed(time.sleep)(0) for _ in range(10)) assert len(records) == 10 @pytest.mark.parametrize("n_jobs", [1, 2]) def test_dispatch_config_parallel(n_jobs): """Check that we properly dispatch the configuration in parallel processing. Non-regression test for: https://github.com/scikit-learn/scikit-learn/issues/25239 """ pd = pytest.importorskip("pandas") iris = load_iris(as_frame=True) class TransformerRequiredDataFrame(StandardScaler): def fit(self, X, y=None): assert isinstance(X, pd.DataFrame), "X should be a DataFrame" return super().fit(X, y) def transform(self, X, y=None): assert isinstance(X, pd.DataFrame), "X should be a DataFrame" return super().transform(X, y) dropper = make_column_transformer( ("drop", [0]), remainder="passthrough", n_jobs=n_jobs, ) param_grid = {"randomforestclassifier__max_depth": [1, 2, 3]} search_cv = GridSearchCV( make_pipeline( dropper, TransformerRequiredDataFrame(), RandomForestClassifier(n_estimators=5, n_jobs=n_jobs), ), param_grid, cv=5, n_jobs=n_jobs, error_score="raise", # this search should not fail ) # make sure that `fit` would fail in case we don't request dataframe with pytest.raises(AssertionError, match="X should be a DataFrame"): search_cv.fit(iris.data, iris.target) with config_context(transform_output="pandas"): # we expect each intermediate steps to output a DataFrame search_cv.fit(iris.data, iris.target) assert not np.isnan(search_cv.cv_results_["mean_test_score"]).any()