from __future__ import annotations from typing import Any import numpy as np from pandas._libs.lib import infer_dtype from pandas._libs.tslibs import iNaT from pandas.errors import NoBufferPresent from pandas.util._decorators import cache_readonly import pandas as pd from pandas.api.types import ( is_categorical_dtype, is_string_dtype, ) from pandas.core.interchange.buffer import PandasBuffer from pandas.core.interchange.dataframe_protocol import ( Column, ColumnBuffers, ColumnNullType, DtypeKind, ) from pandas.core.interchange.utils import ( ArrowCTypes, Endianness, dtype_to_arrow_c_fmt, ) _NP_KINDS = { "i": DtypeKind.INT, "u": DtypeKind.UINT, "f": DtypeKind.FLOAT, "b": DtypeKind.BOOL, "U": DtypeKind.STRING, "M": DtypeKind.DATETIME, "m": DtypeKind.DATETIME, } _NULL_DESCRIPTION = { DtypeKind.FLOAT: (ColumnNullType.USE_NAN, None), DtypeKind.DATETIME: (ColumnNullType.USE_SENTINEL, iNaT), DtypeKind.INT: (ColumnNullType.NON_NULLABLE, None), DtypeKind.UINT: (ColumnNullType.NON_NULLABLE, None), DtypeKind.BOOL: (ColumnNullType.NON_NULLABLE, None), # Null values for categoricals are stored as `-1` sentinel values # in the category date (e.g., `col.values.codes` is int8 np.ndarray) DtypeKind.CATEGORICAL: (ColumnNullType.USE_SENTINEL, -1), # follow Arrow in using 1 as valid value and 0 for missing/null value DtypeKind.STRING: (ColumnNullType.USE_BYTEMASK, 0), } _NO_VALIDITY_BUFFER = { ColumnNullType.NON_NULLABLE: "This column is non-nullable", ColumnNullType.USE_NAN: "This column uses NaN as null", ColumnNullType.USE_SENTINEL: "This column uses a sentinel value", } class PandasColumn(Column): """ A column object, with only the methods and properties required by the interchange protocol defined. A column can contain one or more chunks. Each chunk can contain up to three buffers - a data buffer, a mask buffer (depending on null representation), and an offsets buffer (if variable-size binary; e.g., variable-length strings). Note: this Column object can only be produced by ``__dataframe__``, so doesn't need its own version or ``__column__`` protocol. """ def __init__(self, column: pd.Series, allow_copy: bool = True) -> None: """ Note: doesn't deal with extension arrays yet, just assume a regular Series/ndarray for now. """ if not isinstance(column, pd.Series): raise NotImplementedError(f"Columns of type {type(column)} not handled yet") # Store the column as a private attribute self._col = column self._allow_copy = allow_copy def size(self) -> int: """ Size of the column, in elements. """ return self._col.size @property def offset(self) -> int: """ Offset of first element. Always zero. """ # TODO: chunks are implemented now, probably this should return something return 0 @cache_readonly def dtype(self) -> tuple[DtypeKind, int, str, str]: dtype = self._col.dtype if is_categorical_dtype(dtype): codes = self._col.values.codes ( _, bitwidth, c_arrow_dtype_f_str, _, ) = self._dtype_from_pandasdtype(codes.dtype) return ( DtypeKind.CATEGORICAL, bitwidth, c_arrow_dtype_f_str, Endianness.NATIVE, ) elif is_string_dtype(dtype): if infer_dtype(self._col) == "string": return ( DtypeKind.STRING, 8, dtype_to_arrow_c_fmt(dtype), Endianness.NATIVE, ) raise NotImplementedError("Non-string object dtypes are not supported yet") else: return self._dtype_from_pandasdtype(dtype) def _dtype_from_pandasdtype(self, dtype) -> tuple[DtypeKind, int, str, str]: """ See `self.dtype` for details. """ # Note: 'c' (complex) not handled yet (not in array spec v1). # 'b', 'B' (bytes), 'S', 'a', (old-style string) 'V' (void) not handled # datetime and timedelta both map to datetime (is timedelta handled?) kind = _NP_KINDS.get(dtype.kind, None) if kind is None: # Not a NumPy dtype. Check if it's a categorical maybe raise ValueError(f"Data type {dtype} not supported by interchange protocol") return kind, dtype.itemsize * 8, dtype_to_arrow_c_fmt(dtype), dtype.byteorder @property def describe_categorical(self): """ If the dtype is categorical, there are two options: - There are only values in the data buffer. - There is a separate non-categorical Column encoding for categorical values. Raises TypeError if the dtype is not categorical Content of returned dict: - "is_ordered" : bool, whether the ordering of dictionary indices is semantically meaningful. - "is_dictionary" : bool, whether a dictionary-style mapping of categorical values to other objects exists - "categories" : Column representing the (implicit) mapping of indices to category values (e.g. an array of cat1, cat2, ...). None if not a dictionary-style categorical. """ if not self.dtype[0] == DtypeKind.CATEGORICAL: raise TypeError( "describe_categorical only works on a column with categorical dtype!" ) return { "is_ordered": self._col.cat.ordered, "is_dictionary": True, "categories": PandasColumn(pd.Series(self._col.cat.categories)), } @property def describe_null(self): kind = self.dtype[0] try: null, value = _NULL_DESCRIPTION[kind] except KeyError: raise NotImplementedError(f"Data type {kind} not yet supported") return null, value @cache_readonly def null_count(self) -> int: """ Number of null elements. Should always be known. """ return self._col.isna().sum().item() @property def metadata(self) -> dict[str, pd.Index]: """ Store specific metadata of the column. """ return {"pandas.index": self._col.index} def num_chunks(self) -> int: """ Return the number of chunks the column consists of. """ return 1 def get_chunks(self, n_chunks: int | None = None): """ Return an iterator yielding the chunks. See `DataFrame.get_chunks` for details on ``n_chunks``. """ if n_chunks and n_chunks > 1: size = len(self._col) step = size // n_chunks if size % n_chunks != 0: step += 1 for start in range(0, step * n_chunks, step): yield PandasColumn( self._col.iloc[start : start + step], self._allow_copy ) else: yield self def get_buffers(self) -> ColumnBuffers: """ Return a dictionary containing the underlying buffers. The returned dictionary has the following contents: - "data": a two-element tuple whose first element is a buffer containing the data and whose second element is the data buffer's associated dtype. - "validity": a two-element tuple whose first element is a buffer containing mask values indicating missing data and whose second element is the mask value buffer's associated dtype. None if the null representation is not a bit or byte mask. - "offsets": a two-element tuple whose first element is a buffer containing the offset values for variable-size binary data (e.g., variable-length strings) and whose second element is the offsets buffer's associated dtype. None if the data buffer does not have an associated offsets buffer. """ buffers: ColumnBuffers = { "data": self._get_data_buffer(), "validity": None, "offsets": None, } try: buffers["validity"] = self._get_validity_buffer() except NoBufferPresent: pass try: buffers["offsets"] = self._get_offsets_buffer() except NoBufferPresent: pass return buffers def _get_data_buffer( self, ) -> tuple[PandasBuffer, Any]: # Any is for self.dtype tuple """ Return the buffer containing the data and the buffer's associated dtype. """ if self.dtype[0] in ( DtypeKind.INT, DtypeKind.UINT, DtypeKind.FLOAT, DtypeKind.BOOL, DtypeKind.DATETIME, ): buffer = PandasBuffer(self._col.to_numpy(), allow_copy=self._allow_copy) dtype = self.dtype elif self.dtype[0] == DtypeKind.CATEGORICAL: codes = self._col.values._codes buffer = PandasBuffer(codes, allow_copy=self._allow_copy) dtype = self._dtype_from_pandasdtype(codes.dtype) elif self.dtype[0] == DtypeKind.STRING: # Marshal the strings from a NumPy object array into a byte array buf = self._col.to_numpy() b = bytearray() # TODO: this for-loop is slow; can be implemented in Cython/C/C++ later for obj in buf: if isinstance(obj, str): b.extend(obj.encode(encoding="utf-8")) # Convert the byte array to a Pandas "buffer" using # a NumPy array as the backing store buffer = PandasBuffer(np.frombuffer(b, dtype="uint8")) # Define the dtype for the returned buffer dtype = ( DtypeKind.STRING, 8, ArrowCTypes.STRING, Endianness.NATIVE, ) # note: currently only support native endianness else: raise NotImplementedError(f"Data type {self._col.dtype} not handled yet") return buffer, dtype def _get_validity_buffer(self) -> tuple[PandasBuffer, Any]: """ Return the buffer containing the mask values indicating missing data and the buffer's associated dtype. Raises NoBufferPresent if null representation is not a bit or byte mask. """ null, invalid = self.describe_null if self.dtype[0] == DtypeKind.STRING: # For now, use byte array as the mask. # TODO: maybe store as bit array to save space?.. buf = self._col.to_numpy() # Determine the encoding for valid values valid = invalid == 0 invalid = not valid mask = np.zeros(shape=(len(buf),), dtype=np.bool_) for i, obj in enumerate(buf): mask[i] = valid if isinstance(obj, str) else invalid # Convert the mask array to a Pandas "buffer" using # a NumPy array as the backing store buffer = PandasBuffer(mask) # Define the dtype of the returned buffer dtype = (DtypeKind.BOOL, 8, ArrowCTypes.BOOL, Endianness.NATIVE) return buffer, dtype try: msg = f"{_NO_VALIDITY_BUFFER[null]} so does not have a separate mask" except KeyError: # TODO: implement for other bit/byte masks? raise NotImplementedError("See self.describe_null") raise NoBufferPresent(msg) def _get_offsets_buffer(self) -> tuple[PandasBuffer, Any]: """ Return the buffer containing the offset values for variable-size binary data (e.g., variable-length strings) and the buffer's associated dtype. Raises NoBufferPresent if the data buffer does not have an associated offsets buffer. """ if self.dtype[0] == DtypeKind.STRING: # For each string, we need to manually determine the next offset values = self._col.to_numpy() ptr = 0 offsets = np.zeros(shape=(len(values) + 1,), dtype=np.int64) for i, v in enumerate(values): # For missing values (in this case, `np.nan` values) # we don't increment the pointer if isinstance(v, str): b = v.encode(encoding="utf-8") ptr += len(b) offsets[i + 1] = ptr # Convert the offsets to a Pandas "buffer" using # the NumPy array as the backing store buffer = PandasBuffer(offsets) # Assemble the buffer dtype info dtype = ( DtypeKind.INT, 64, ArrowCTypes.INT64, Endianness.NATIVE, ) # note: currently only support native endianness else: raise NoBufferPresent( "This column has a fixed-length dtype so " "it does not have an offsets buffer" ) return buffer, dtype