1022 lines
30 KiB
Python
1022 lines
30 KiB
Python
import functools
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import sys
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import math
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import warnings
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import numpy.core.numeric as _nx
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from numpy.core.numeric import (
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asarray, ScalarType, array, alltrue, cumprod, arange, ndim
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)
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from numpy.core.numerictypes import find_common_type, issubdtype
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import numpy.matrixlib as matrixlib
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from .function_base import diff
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from numpy.core.multiarray import ravel_multi_index, unravel_index
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from numpy.core.overrides import set_module
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from numpy.core import overrides, linspace
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from numpy.lib.stride_tricks import as_strided
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array_function_dispatch = functools.partial(
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overrides.array_function_dispatch, module='numpy')
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__all__ = [
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'ravel_multi_index', 'unravel_index', 'mgrid', 'ogrid', 'r_', 'c_',
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's_', 'index_exp', 'ix_', 'ndenumerate', 'ndindex', 'fill_diagonal',
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'diag_indices', 'diag_indices_from'
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]
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def _ix__dispatcher(*args):
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return args
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@array_function_dispatch(_ix__dispatcher)
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def ix_(*args):
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"""
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Construct an open mesh from multiple sequences.
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This function takes N 1-D sequences and returns N outputs with N
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dimensions each, such that the shape is 1 in all but one dimension
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and the dimension with the non-unit shape value cycles through all
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N dimensions.
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Using `ix_` one can quickly construct index arrays that will index
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the cross product. ``a[np.ix_([1,3],[2,5])]`` returns the array
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``[[a[1,2] a[1,5]], [a[3,2] a[3,5]]]``.
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Parameters
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----------
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args : 1-D sequences
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Each sequence should be of integer or boolean type.
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Boolean sequences will be interpreted as boolean masks for the
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corresponding dimension (equivalent to passing in
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``np.nonzero(boolean_sequence)``).
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Returns
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-------
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out : tuple of ndarrays
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N arrays with N dimensions each, with N the number of input
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sequences. Together these arrays form an open mesh.
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See Also
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--------
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ogrid, mgrid, meshgrid
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Examples
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--------
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>>> a = np.arange(10).reshape(2, 5)
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>>> a
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array([[0, 1, 2, 3, 4],
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[5, 6, 7, 8, 9]])
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>>> ixgrid = np.ix_([0, 1], [2, 4])
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>>> ixgrid
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(array([[0],
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[1]]), array([[2, 4]]))
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>>> ixgrid[0].shape, ixgrid[1].shape
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((2, 1), (1, 2))
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>>> a[ixgrid]
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array([[2, 4],
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[7, 9]])
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>>> ixgrid = np.ix_([True, True], [2, 4])
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>>> a[ixgrid]
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array([[2, 4],
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[7, 9]])
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>>> ixgrid = np.ix_([True, True], [False, False, True, False, True])
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>>> a[ixgrid]
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array([[2, 4],
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[7, 9]])
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"""
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out = []
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nd = len(args)
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for k, new in enumerate(args):
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if not isinstance(new, _nx.ndarray):
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new = asarray(new)
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if new.size == 0:
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# Explicitly type empty arrays to avoid float default
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new = new.astype(_nx.intp)
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if new.ndim != 1:
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raise ValueError("Cross index must be 1 dimensional")
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if issubdtype(new.dtype, _nx.bool_):
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new, = new.nonzero()
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new = new.reshape((1,)*k + (new.size,) + (1,)*(nd-k-1))
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out.append(new)
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return tuple(out)
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class nd_grid:
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"""
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Construct a multi-dimensional "meshgrid".
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``grid = nd_grid()`` creates an instance which will return a mesh-grid
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when indexed. The dimension and number of the output arrays are equal
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to the number of indexing dimensions. If the step length is not a
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complex number, then the stop is not inclusive.
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However, if the step length is a **complex number** (e.g. 5j), then the
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integer part of its magnitude is interpreted as specifying the
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number of points to create between the start and stop values, where
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the stop value **is inclusive**.
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If instantiated with an argument of ``sparse=True``, the mesh-grid is
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open (or not fleshed out) so that only one-dimension of each returned
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argument is greater than 1.
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Parameters
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----------
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sparse : bool, optional
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Whether the grid is sparse or not. Default is False.
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Notes
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-----
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Two instances of `nd_grid` are made available in the NumPy namespace,
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`mgrid` and `ogrid`, approximately defined as::
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mgrid = nd_grid(sparse=False)
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ogrid = nd_grid(sparse=True)
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Users should use these pre-defined instances instead of using `nd_grid`
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directly.
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"""
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def __init__(self, sparse=False):
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self.sparse = sparse
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def __getitem__(self, key):
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try:
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size = []
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# Mimic the behavior of `np.arange` and use a data type
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# which is at least as large as `np.int_`
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num_list = [0]
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for k in range(len(key)):
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step = key[k].step
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start = key[k].start
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stop = key[k].stop
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if start is None:
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start = 0
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if step is None:
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step = 1
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if isinstance(step, (_nx.complexfloating, complex)):
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step = abs(step)
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size.append(int(step))
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else:
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size.append(
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int(math.ceil((stop - start) / (step*1.0))))
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num_list += [start, stop, step]
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typ = _nx.result_type(*num_list)
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if self.sparse:
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nn = [_nx.arange(_x, dtype=_t)
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for _x, _t in zip(size, (typ,)*len(size))]
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else:
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nn = _nx.indices(size, typ)
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for k, kk in enumerate(key):
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step = kk.step
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start = kk.start
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if start is None:
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start = 0
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if step is None:
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step = 1
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if isinstance(step, (_nx.complexfloating, complex)):
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step = int(abs(step))
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if step != 1:
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step = (kk.stop - start) / float(step - 1)
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nn[k] = (nn[k]*step+start)
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if self.sparse:
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slobj = [_nx.newaxis]*len(size)
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for k in range(len(size)):
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slobj[k] = slice(None, None)
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nn[k] = nn[k][tuple(slobj)]
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slobj[k] = _nx.newaxis
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return nn
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except (IndexError, TypeError):
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step = key.step
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stop = key.stop
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start = key.start
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if start is None:
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start = 0
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if isinstance(step, (_nx.complexfloating, complex)):
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# Prevent the (potential) creation of integer arrays
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step_float = abs(step)
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step = length = int(step_float)
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if step != 1:
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step = (key.stop-start)/float(step-1)
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typ = _nx.result_type(start, stop, step_float)
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return _nx.arange(0, length, 1, dtype=typ)*step + start
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else:
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return _nx.arange(start, stop, step)
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class MGridClass(nd_grid):
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"""
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`nd_grid` instance which returns a dense multi-dimensional "meshgrid".
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An instance of `numpy.lib.index_tricks.nd_grid` which returns an dense
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(or fleshed out) mesh-grid when indexed, so that each returned argument
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has the same shape. The dimensions and number of the output arrays are
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equal to the number of indexing dimensions. If the step length is not a
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complex number, then the stop is not inclusive.
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However, if the step length is a **complex number** (e.g. 5j), then
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the integer part of its magnitude is interpreted as specifying the
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number of points to create between the start and stop values, where
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the stop value **is inclusive**.
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Returns
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-------
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mesh-grid `ndarrays` all of the same dimensions
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See Also
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--------
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lib.index_tricks.nd_grid : class of `ogrid` and `mgrid` objects
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ogrid : like mgrid but returns open (not fleshed out) mesh grids
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meshgrid: return coordinate matrices from coordinate vectors
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r_ : array concatenator
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:ref:`how-to-partition`
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Examples
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--------
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>>> np.mgrid[0:5, 0:5]
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array([[[0, 0, 0, 0, 0],
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[1, 1, 1, 1, 1],
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[2, 2, 2, 2, 2],
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[3, 3, 3, 3, 3],
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[4, 4, 4, 4, 4]],
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[[0, 1, 2, 3, 4],
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[0, 1, 2, 3, 4],
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[0, 1, 2, 3, 4],
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[0, 1, 2, 3, 4],
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[0, 1, 2, 3, 4]]])
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>>> np.mgrid[-1:1:5j]
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array([-1. , -0.5, 0. , 0.5, 1. ])
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"""
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def __init__(self):
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super().__init__(sparse=False)
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mgrid = MGridClass()
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class OGridClass(nd_grid):
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"""
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`nd_grid` instance which returns an open multi-dimensional "meshgrid".
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An instance of `numpy.lib.index_tricks.nd_grid` which returns an open
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(i.e. not fleshed out) mesh-grid when indexed, so that only one dimension
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of each returned array is greater than 1. The dimension and number of the
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output arrays are equal to the number of indexing dimensions. If the step
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length is not a complex number, then the stop is not inclusive.
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However, if the step length is a **complex number** (e.g. 5j), then
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the integer part of its magnitude is interpreted as specifying the
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number of points to create between the start and stop values, where
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the stop value **is inclusive**.
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Returns
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-------
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mesh-grid
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`ndarrays` with only one dimension not equal to 1
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See Also
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--------
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np.lib.index_tricks.nd_grid : class of `ogrid` and `mgrid` objects
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mgrid : like `ogrid` but returns dense (or fleshed out) mesh grids
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meshgrid: return coordinate matrices from coordinate vectors
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r_ : array concatenator
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:ref:`how-to-partition`
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Examples
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--------
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>>> from numpy import ogrid
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>>> ogrid[-1:1:5j]
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array([-1. , -0.5, 0. , 0.5, 1. ])
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>>> ogrid[0:5,0:5]
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[array([[0],
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[1],
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[2],
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[3],
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[4]]), array([[0, 1, 2, 3, 4]])]
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"""
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def __init__(self):
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super().__init__(sparse=True)
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ogrid = OGridClass()
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class AxisConcatenator:
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"""
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Translates slice objects to concatenation along an axis.
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For detailed documentation on usage, see `r_`.
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"""
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# allow ma.mr_ to override this
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concatenate = staticmethod(_nx.concatenate)
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makemat = staticmethod(matrixlib.matrix)
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def __init__(self, axis=0, matrix=False, ndmin=1, trans1d=-1):
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self.axis = axis
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self.matrix = matrix
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self.trans1d = trans1d
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self.ndmin = ndmin
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def __getitem__(self, key):
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# handle matrix builder syntax
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if isinstance(key, str):
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frame = sys._getframe().f_back
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mymat = matrixlib.bmat(key, frame.f_globals, frame.f_locals)
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return mymat
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if not isinstance(key, tuple):
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key = (key,)
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# copy attributes, since they can be overridden in the first argument
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trans1d = self.trans1d
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ndmin = self.ndmin
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matrix = self.matrix
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axis = self.axis
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objs = []
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scalars = []
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arraytypes = []
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scalartypes = []
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for k, item in enumerate(key):
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scalar = False
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if isinstance(item, slice):
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step = item.step
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start = item.start
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stop = item.stop
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if start is None:
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start = 0
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if step is None:
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step = 1
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if isinstance(step, (_nx.complexfloating, complex)):
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size = int(abs(step))
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newobj = linspace(start, stop, num=size)
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else:
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newobj = _nx.arange(start, stop, step)
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if ndmin > 1:
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newobj = array(newobj, copy=False, ndmin=ndmin)
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if trans1d != -1:
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newobj = newobj.swapaxes(-1, trans1d)
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elif isinstance(item, str):
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if k != 0:
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raise ValueError("special directives must be the "
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"first entry.")
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if item in ('r', 'c'):
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matrix = True
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col = (item == 'c')
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continue
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if ',' in item:
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vec = item.split(',')
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try:
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axis, ndmin = [int(x) for x in vec[:2]]
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if len(vec) == 3:
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trans1d = int(vec[2])
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continue
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except Exception as e:
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raise ValueError(
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"unknown special directive {!r}".format(item)
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) from e
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try:
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axis = int(item)
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continue
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except (ValueError, TypeError) as e:
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raise ValueError("unknown special directive") from e
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elif type(item) in ScalarType:
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newobj = array(item, ndmin=ndmin)
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scalars.append(len(objs))
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scalar = True
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scalartypes.append(newobj.dtype)
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else:
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item_ndim = ndim(item)
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newobj = array(item, copy=False, subok=True, ndmin=ndmin)
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if trans1d != -1 and item_ndim < ndmin:
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k2 = ndmin - item_ndim
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k1 = trans1d
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if k1 < 0:
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k1 += k2 + 1
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defaxes = list(range(ndmin))
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axes = defaxes[:k1] + defaxes[k2:] + defaxes[k1:k2]
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newobj = newobj.transpose(axes)
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objs.append(newobj)
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if not scalar and isinstance(newobj, _nx.ndarray):
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arraytypes.append(newobj.dtype)
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# Ensure that scalars won't up-cast unless warranted
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final_dtype = find_common_type(arraytypes, scalartypes)
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if final_dtype is not None:
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for k in scalars:
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objs[k] = objs[k].astype(final_dtype)
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res = self.concatenate(tuple(objs), axis=axis)
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if matrix:
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oldndim = res.ndim
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res = self.makemat(res)
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if oldndim == 1 and col:
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res = res.T
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return res
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def __len__(self):
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return 0
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# separate classes are used here instead of just making r_ = concatentor(0),
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# etc. because otherwise we couldn't get the doc string to come out right
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# in help(r_)
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class RClass(AxisConcatenator):
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"""
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Translates slice objects to concatenation along the first axis.
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This is a simple way to build up arrays quickly. There are two use cases.
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1. If the index expression contains comma separated arrays, then stack
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them along their first axis.
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2. If the index expression contains slice notation or scalars then create
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a 1-D array with a range indicated by the slice notation.
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If slice notation is used, the syntax ``start:stop:step`` is equivalent
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to ``np.arange(start, stop, step)`` inside of the brackets. However, if
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``step`` is an imaginary number (i.e. 100j) then its integer portion is
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interpreted as a number-of-points desired and the start and stop are
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inclusive. In other words ``start:stop:stepj`` is interpreted as
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``np.linspace(start, stop, step, endpoint=1)`` inside of the brackets.
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After expansion of slice notation, all comma separated sequences are
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concatenated together.
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Optional character strings placed as the first element of the index
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expression can be used to change the output. The strings 'r' or 'c' result
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in matrix output. If the result is 1-D and 'r' is specified a 1 x N (row)
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matrix is produced. If the result is 1-D and 'c' is specified, then a N x 1
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(column) matrix is produced. If the result is 2-D then both provide the
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same matrix result.
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A string integer specifies which axis to stack multiple comma separated
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arrays along. A string of two comma-separated integers allows indication
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of the minimum number of dimensions to force each entry into as the
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second integer (the axis to concatenate along is still the first integer).
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A string with three comma-separated integers allows specification of the
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axis to concatenate along, the minimum number of dimensions to force the
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entries to, and which axis should contain the start of the arrays which
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are less than the specified number of dimensions. In other words the third
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integer allows you to specify where the 1's should be placed in the shape
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of the arrays that have their shapes upgraded. By default, they are placed
|
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in the front of the shape tuple. The third argument allows you to specify
|
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where the start of the array should be instead. Thus, a third argument of
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'0' would place the 1's at the end of the array shape. Negative integers
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specify where in the new shape tuple the last dimension of upgraded arrays
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should be placed, so the default is '-1'.
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Parameters
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----------
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Not a function, so takes no parameters
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|
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Returns
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-------
|
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A concatenated ndarray or matrix.
|
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|
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See Also
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--------
|
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concatenate : Join a sequence of arrays along an existing axis.
|
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c_ : Translates slice objects to concatenation along the second axis.
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|
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Examples
|
|
--------
|
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>>> np.r_[np.array([1,2,3]), 0, 0, np.array([4,5,6])]
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array([1, 2, 3, ..., 4, 5, 6])
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>>> np.r_[-1:1:6j, [0]*3, 5, 6]
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array([-1. , -0.6, -0.2, 0.2, 0.6, 1. , 0. , 0. , 0. , 5. , 6. ])
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|
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String integers specify the axis to concatenate along or the minimum
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number of dimensions to force entries into.
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>>> a = np.array([[0, 1, 2], [3, 4, 5]])
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>>> np.r_['-1', a, a] # concatenate along last axis
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array([[0, 1, 2, 0, 1, 2],
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[3, 4, 5, 3, 4, 5]])
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>>> np.r_['0,2', [1,2,3], [4,5,6]] # concatenate along first axis, dim>=2
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array([[1, 2, 3],
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[4, 5, 6]])
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|
|
>>> np.r_['0,2,0', [1,2,3], [4,5,6]]
|
|
array([[1],
|
|
[2],
|
|
[3],
|
|
[4],
|
|
[5],
|
|
[6]])
|
|
>>> np.r_['1,2,0', [1,2,3], [4,5,6]]
|
|
array([[1, 4],
|
|
[2, 5],
|
|
[3, 6]])
|
|
|
|
Using 'r' or 'c' as a first string argument creates a matrix.
|
|
|
|
>>> np.r_['r',[1,2,3], [4,5,6]]
|
|
matrix([[1, 2, 3, 4, 5, 6]])
|
|
|
|
"""
|
|
|
|
def __init__(self):
|
|
AxisConcatenator.__init__(self, 0)
|
|
|
|
|
|
r_ = RClass()
|
|
|
|
|
|
class CClass(AxisConcatenator):
|
|
"""
|
|
Translates slice objects to concatenation along the second axis.
|
|
|
|
This is short-hand for ``np.r_['-1,2,0', index expression]``, which is
|
|
useful because of its common occurrence. In particular, arrays will be
|
|
stacked along their last axis after being upgraded to at least 2-D with
|
|
1's post-pended to the shape (column vectors made out of 1-D arrays).
|
|
|
|
See Also
|
|
--------
|
|
column_stack : Stack 1-D arrays as columns into a 2-D array.
|
|
r_ : For more detailed documentation.
|
|
|
|
Examples
|
|
--------
|
|
>>> np.c_[np.array([1,2,3]), np.array([4,5,6])]
|
|
array([[1, 4],
|
|
[2, 5],
|
|
[3, 6]])
|
|
>>> np.c_[np.array([[1,2,3]]), 0, 0, np.array([[4,5,6]])]
|
|
array([[1, 2, 3, ..., 4, 5, 6]])
|
|
|
|
"""
|
|
|
|
def __init__(self):
|
|
AxisConcatenator.__init__(self, -1, ndmin=2, trans1d=0)
|
|
|
|
|
|
c_ = CClass()
|
|
|
|
|
|
@set_module('numpy')
|
|
class ndenumerate:
|
|
"""
|
|
Multidimensional index iterator.
|
|
|
|
Return an iterator yielding pairs of array coordinates and values.
|
|
|
|
Parameters
|
|
----------
|
|
arr : ndarray
|
|
Input array.
|
|
|
|
See Also
|
|
--------
|
|
ndindex, flatiter
|
|
|
|
Examples
|
|
--------
|
|
>>> a = np.array([[1, 2], [3, 4]])
|
|
>>> for index, x in np.ndenumerate(a):
|
|
... print(index, x)
|
|
(0, 0) 1
|
|
(0, 1) 2
|
|
(1, 0) 3
|
|
(1, 1) 4
|
|
|
|
"""
|
|
|
|
def __init__(self, arr):
|
|
self.iter = asarray(arr).flat
|
|
|
|
def __next__(self):
|
|
"""
|
|
Standard iterator method, returns the index tuple and array value.
|
|
|
|
Returns
|
|
-------
|
|
coords : tuple of ints
|
|
The indices of the current iteration.
|
|
val : scalar
|
|
The array element of the current iteration.
|
|
|
|
"""
|
|
return self.iter.coords, next(self.iter)
|
|
|
|
def __iter__(self):
|
|
return self
|
|
|
|
|
|
@set_module('numpy')
|
|
class ndindex:
|
|
"""
|
|
An N-dimensional iterator object to index arrays.
|
|
|
|
Given the shape of an array, an `ndindex` instance iterates over
|
|
the N-dimensional index of the array. At each iteration a tuple
|
|
of indices is returned, the last dimension is iterated over first.
|
|
|
|
Parameters
|
|
----------
|
|
shape : ints, or a single tuple of ints
|
|
The size of each dimension of the array can be passed as
|
|
individual parameters or as the elements of a tuple.
|
|
|
|
See Also
|
|
--------
|
|
ndenumerate, flatiter
|
|
|
|
Examples
|
|
--------
|
|
Dimensions as individual arguments
|
|
|
|
>>> for index in np.ndindex(3, 2, 1):
|
|
... print(index)
|
|
(0, 0, 0)
|
|
(0, 1, 0)
|
|
(1, 0, 0)
|
|
(1, 1, 0)
|
|
(2, 0, 0)
|
|
(2, 1, 0)
|
|
|
|
Same dimensions - but in a tuple ``(3, 2, 1)``
|
|
|
|
>>> for index in np.ndindex((3, 2, 1)):
|
|
... print(index)
|
|
(0, 0, 0)
|
|
(0, 1, 0)
|
|
(1, 0, 0)
|
|
(1, 1, 0)
|
|
(2, 0, 0)
|
|
(2, 1, 0)
|
|
|
|
"""
|
|
|
|
def __init__(self, *shape):
|
|
if len(shape) == 1 and isinstance(shape[0], tuple):
|
|
shape = shape[0]
|
|
x = as_strided(_nx.zeros(1), shape=shape,
|
|
strides=_nx.zeros_like(shape))
|
|
self._it = _nx.nditer(x, flags=['multi_index', 'zerosize_ok'],
|
|
order='C')
|
|
|
|
def __iter__(self):
|
|
return self
|
|
|
|
def ndincr(self):
|
|
"""
|
|
Increment the multi-dimensional index by one.
|
|
|
|
This method is for backward compatibility only: do not use.
|
|
|
|
.. deprecated:: 1.20.0
|
|
This method has been advised against since numpy 1.8.0, but only
|
|
started emitting DeprecationWarning as of this version.
|
|
"""
|
|
# NumPy 1.20.0, 2020-09-08
|
|
warnings.warn(
|
|
"`ndindex.ndincr()` is deprecated, use `next(ndindex)` instead",
|
|
DeprecationWarning, stacklevel=2)
|
|
next(self)
|
|
|
|
def __next__(self):
|
|
"""
|
|
Standard iterator method, updates the index and returns the index
|
|
tuple.
|
|
|
|
Returns
|
|
-------
|
|
val : tuple of ints
|
|
Returns a tuple containing the indices of the current
|
|
iteration.
|
|
|
|
"""
|
|
next(self._it)
|
|
return self._it.multi_index
|
|
|
|
|
|
# You can do all this with slice() plus a few special objects,
|
|
# but there's a lot to remember. This version is simpler because
|
|
# it uses the standard array indexing syntax.
|
|
#
|
|
# Written by Konrad Hinsen <hinsen@cnrs-orleans.fr>
|
|
# last revision: 1999-7-23
|
|
#
|
|
# Cosmetic changes by T. Oliphant 2001
|
|
#
|
|
#
|
|
|
|
class IndexExpression:
|
|
"""
|
|
A nicer way to build up index tuples for arrays.
|
|
|
|
.. note::
|
|
Use one of the two predefined instances `index_exp` or `s_`
|
|
rather than directly using `IndexExpression`.
|
|
|
|
For any index combination, including slicing and axis insertion,
|
|
``a[indices]`` is the same as ``a[np.index_exp[indices]]`` for any
|
|
array `a`. However, ``np.index_exp[indices]`` can be used anywhere
|
|
in Python code and returns a tuple of slice objects that can be
|
|
used in the construction of complex index expressions.
|
|
|
|
Parameters
|
|
----------
|
|
maketuple : bool
|
|
If True, always returns a tuple.
|
|
|
|
See Also
|
|
--------
|
|
index_exp : Predefined instance that always returns a tuple:
|
|
`index_exp = IndexExpression(maketuple=True)`.
|
|
s_ : Predefined instance without tuple conversion:
|
|
`s_ = IndexExpression(maketuple=False)`.
|
|
|
|
Notes
|
|
-----
|
|
You can do all this with `slice()` plus a few special objects,
|
|
but there's a lot to remember and this version is simpler because
|
|
it uses the standard array indexing syntax.
|
|
|
|
Examples
|
|
--------
|
|
>>> np.s_[2::2]
|
|
slice(2, None, 2)
|
|
>>> np.index_exp[2::2]
|
|
(slice(2, None, 2),)
|
|
|
|
>>> np.array([0, 1, 2, 3, 4])[np.s_[2::2]]
|
|
array([2, 4])
|
|
|
|
"""
|
|
|
|
def __init__(self, maketuple):
|
|
self.maketuple = maketuple
|
|
|
|
def __getitem__(self, item):
|
|
if self.maketuple and not isinstance(item, tuple):
|
|
return (item,)
|
|
else:
|
|
return item
|
|
|
|
|
|
index_exp = IndexExpression(maketuple=True)
|
|
s_ = IndexExpression(maketuple=False)
|
|
|
|
# End contribution from Konrad.
|
|
|
|
|
|
# The following functions complement those in twodim_base, but are
|
|
# applicable to N-dimensions.
|
|
|
|
|
|
def _fill_diagonal_dispatcher(a, val, wrap=None):
|
|
return (a,)
|
|
|
|
|
|
@array_function_dispatch(_fill_diagonal_dispatcher)
|
|
def fill_diagonal(a, val, wrap=False):
|
|
"""Fill the main diagonal of the given array of any dimensionality.
|
|
|
|
For an array `a` with ``a.ndim >= 2``, the diagonal is the list of
|
|
locations with indices ``a[i, ..., i]`` all identical. This function
|
|
modifies the input array in-place, it does not return a value.
|
|
|
|
Parameters
|
|
----------
|
|
a : array, at least 2-D.
|
|
Array whose diagonal is to be filled, it gets modified in-place.
|
|
|
|
val : scalar or array_like
|
|
Value(s) to write on the diagonal. If `val` is scalar, the value is
|
|
written along the diagonal. If array-like, the flattened `val` is
|
|
written along the diagonal, repeating if necessary to fill all
|
|
diagonal entries.
|
|
|
|
wrap : bool
|
|
For tall matrices in NumPy version up to 1.6.2, the
|
|
diagonal "wrapped" after N columns. You can have this behavior
|
|
with this option. This affects only tall matrices.
|
|
|
|
See also
|
|
--------
|
|
diag_indices, diag_indices_from
|
|
|
|
Notes
|
|
-----
|
|
.. versionadded:: 1.4.0
|
|
|
|
This functionality can be obtained via `diag_indices`, but internally
|
|
this version uses a much faster implementation that never constructs the
|
|
indices and uses simple slicing.
|
|
|
|
Examples
|
|
--------
|
|
>>> a = np.zeros((3, 3), int)
|
|
>>> np.fill_diagonal(a, 5)
|
|
>>> a
|
|
array([[5, 0, 0],
|
|
[0, 5, 0],
|
|
[0, 0, 5]])
|
|
|
|
The same function can operate on a 4-D array:
|
|
|
|
>>> a = np.zeros((3, 3, 3, 3), int)
|
|
>>> np.fill_diagonal(a, 4)
|
|
|
|
We only show a few blocks for clarity:
|
|
|
|
>>> a[0, 0]
|
|
array([[4, 0, 0],
|
|
[0, 0, 0],
|
|
[0, 0, 0]])
|
|
>>> a[1, 1]
|
|
array([[0, 0, 0],
|
|
[0, 4, 0],
|
|
[0, 0, 0]])
|
|
>>> a[2, 2]
|
|
array([[0, 0, 0],
|
|
[0, 0, 0],
|
|
[0, 0, 4]])
|
|
|
|
The wrap option affects only tall matrices:
|
|
|
|
>>> # tall matrices no wrap
|
|
>>> a = np.zeros((5, 3), int)
|
|
>>> np.fill_diagonal(a, 4)
|
|
>>> a
|
|
array([[4, 0, 0],
|
|
[0, 4, 0],
|
|
[0, 0, 4],
|
|
[0, 0, 0],
|
|
[0, 0, 0]])
|
|
|
|
>>> # tall matrices wrap
|
|
>>> a = np.zeros((5, 3), int)
|
|
>>> np.fill_diagonal(a, 4, wrap=True)
|
|
>>> a
|
|
array([[4, 0, 0],
|
|
[0, 4, 0],
|
|
[0, 0, 4],
|
|
[0, 0, 0],
|
|
[4, 0, 0]])
|
|
|
|
>>> # wide matrices
|
|
>>> a = np.zeros((3, 5), int)
|
|
>>> np.fill_diagonal(a, 4, wrap=True)
|
|
>>> a
|
|
array([[4, 0, 0, 0, 0],
|
|
[0, 4, 0, 0, 0],
|
|
[0, 0, 4, 0, 0]])
|
|
|
|
The anti-diagonal can be filled by reversing the order of elements
|
|
using either `numpy.flipud` or `numpy.fliplr`.
|
|
|
|
>>> a = np.zeros((3, 3), int);
|
|
>>> np.fill_diagonal(np.fliplr(a), [1,2,3]) # Horizontal flip
|
|
>>> a
|
|
array([[0, 0, 1],
|
|
[0, 2, 0],
|
|
[3, 0, 0]])
|
|
>>> np.fill_diagonal(np.flipud(a), [1,2,3]) # Vertical flip
|
|
>>> a
|
|
array([[0, 0, 3],
|
|
[0, 2, 0],
|
|
[1, 0, 0]])
|
|
|
|
Note that the order in which the diagonal is filled varies depending
|
|
on the flip function.
|
|
"""
|
|
if a.ndim < 2:
|
|
raise ValueError("array must be at least 2-d")
|
|
end = None
|
|
if a.ndim == 2:
|
|
# Explicit, fast formula for the common case. For 2-d arrays, we
|
|
# accept rectangular ones.
|
|
step = a.shape[1] + 1
|
|
# This is needed to don't have tall matrix have the diagonal wrap.
|
|
if not wrap:
|
|
end = a.shape[1] * a.shape[1]
|
|
else:
|
|
# For more than d=2, the strided formula is only valid for arrays with
|
|
# all dimensions equal, so we check first.
|
|
if not alltrue(diff(a.shape) == 0):
|
|
raise ValueError("All dimensions of input must be of equal length")
|
|
step = 1 + (cumprod(a.shape[:-1])).sum()
|
|
|
|
# Write the value out into the diagonal.
|
|
a.flat[:end:step] = val
|
|
|
|
|
|
@set_module('numpy')
|
|
def diag_indices(n, ndim=2):
|
|
"""
|
|
Return the indices to access the main diagonal of an array.
|
|
|
|
This returns a tuple of indices that can be used to access the main
|
|
diagonal of an array `a` with ``a.ndim >= 2`` dimensions and shape
|
|
(n, n, ..., n). For ``a.ndim = 2`` this is the usual diagonal, for
|
|
``a.ndim > 2`` this is the set of indices to access ``a[i, i, ..., i]``
|
|
for ``i = [0..n-1]``.
|
|
|
|
Parameters
|
|
----------
|
|
n : int
|
|
The size, along each dimension, of the arrays for which the returned
|
|
indices can be used.
|
|
|
|
ndim : int, optional
|
|
The number of dimensions.
|
|
|
|
See Also
|
|
--------
|
|
diag_indices_from
|
|
|
|
Notes
|
|
-----
|
|
.. versionadded:: 1.4.0
|
|
|
|
Examples
|
|
--------
|
|
Create a set of indices to access the diagonal of a (4, 4) array:
|
|
|
|
>>> di = np.diag_indices(4)
|
|
>>> di
|
|
(array([0, 1, 2, 3]), array([0, 1, 2, 3]))
|
|
>>> a = np.arange(16).reshape(4, 4)
|
|
>>> a
|
|
array([[ 0, 1, 2, 3],
|
|
[ 4, 5, 6, 7],
|
|
[ 8, 9, 10, 11],
|
|
[12, 13, 14, 15]])
|
|
>>> a[di] = 100
|
|
>>> a
|
|
array([[100, 1, 2, 3],
|
|
[ 4, 100, 6, 7],
|
|
[ 8, 9, 100, 11],
|
|
[ 12, 13, 14, 100]])
|
|
|
|
Now, we create indices to manipulate a 3-D array:
|
|
|
|
>>> d3 = np.diag_indices(2, 3)
|
|
>>> d3
|
|
(array([0, 1]), array([0, 1]), array([0, 1]))
|
|
|
|
And use it to set the diagonal of an array of zeros to 1:
|
|
|
|
>>> a = np.zeros((2, 2, 2), dtype=int)
|
|
>>> a[d3] = 1
|
|
>>> a
|
|
array([[[1, 0],
|
|
[0, 0]],
|
|
[[0, 0],
|
|
[0, 1]]])
|
|
|
|
"""
|
|
idx = arange(n)
|
|
return (idx,) * ndim
|
|
|
|
|
|
def _diag_indices_from(arr):
|
|
return (arr,)
|
|
|
|
|
|
@array_function_dispatch(_diag_indices_from)
|
|
def diag_indices_from(arr):
|
|
"""
|
|
Return the indices to access the main diagonal of an n-dimensional array.
|
|
|
|
See `diag_indices` for full details.
|
|
|
|
Parameters
|
|
----------
|
|
arr : array, at least 2-D
|
|
|
|
See Also
|
|
--------
|
|
diag_indices
|
|
|
|
Notes
|
|
-----
|
|
.. versionadded:: 1.4.0
|
|
|
|
"""
|
|
|
|
if not arr.ndim >= 2:
|
|
raise ValueError("input array must be at least 2-d")
|
|
# For more than d=2, the strided formula is only valid for arrays with
|
|
# all dimensions equal, so we check first.
|
|
if not alltrue(diff(arr.shape) == 0):
|
|
raise ValueError("All dimensions of input must be of equal length")
|
|
|
|
return diag_indices(arr.shape[0], arr.ndim)
|