181 lines
4.9 KiB
Python
181 lines
4.9 KiB
Python
|
"""
|
||
|
Read SAS sas7bdat or xport files.
|
||
|
"""
|
||
|
from __future__ import annotations
|
||
|
|
||
|
from abc import (
|
||
|
ABCMeta,
|
||
|
abstractmethod,
|
||
|
)
|
||
|
from types import TracebackType
|
||
|
from typing import (
|
||
|
TYPE_CHECKING,
|
||
|
Hashable,
|
||
|
overload,
|
||
|
)
|
||
|
|
||
|
from pandas._typing import (
|
||
|
CompressionOptions,
|
||
|
FilePath,
|
||
|
ReadBuffer,
|
||
|
)
|
||
|
from pandas.util._decorators import doc
|
||
|
|
||
|
from pandas.core.shared_docs import _shared_docs
|
||
|
|
||
|
from pandas.io.common import stringify_path
|
||
|
|
||
|
if TYPE_CHECKING:
|
||
|
from pandas import DataFrame
|
||
|
|
||
|
|
||
|
# TODO(PY38): replace with Protocol in Python 3.8
|
||
|
class ReaderBase(metaclass=ABCMeta):
|
||
|
"""
|
||
|
Protocol for XportReader and SAS7BDATReader classes.
|
||
|
"""
|
||
|
|
||
|
@abstractmethod
|
||
|
def read(self, nrows: int | None = None) -> DataFrame:
|
||
|
pass
|
||
|
|
||
|
@abstractmethod
|
||
|
def close(self) -> None:
|
||
|
pass
|
||
|
|
||
|
def __enter__(self) -> ReaderBase:
|
||
|
return self
|
||
|
|
||
|
def __exit__(
|
||
|
self,
|
||
|
exc_type: type[BaseException] | None,
|
||
|
exc_value: BaseException | None,
|
||
|
traceback: TracebackType | None,
|
||
|
) -> None:
|
||
|
self.close()
|
||
|
|
||
|
|
||
|
@overload
|
||
|
def read_sas(
|
||
|
filepath_or_buffer: FilePath | ReadBuffer[bytes],
|
||
|
*,
|
||
|
format: str | None = ...,
|
||
|
index: Hashable | None = ...,
|
||
|
encoding: str | None = ...,
|
||
|
chunksize: int = ...,
|
||
|
iterator: bool = ...,
|
||
|
compression: CompressionOptions = ...,
|
||
|
) -> ReaderBase:
|
||
|
...
|
||
|
|
||
|
|
||
|
@overload
|
||
|
def read_sas(
|
||
|
filepath_or_buffer: FilePath | ReadBuffer[bytes],
|
||
|
*,
|
||
|
format: str | None = ...,
|
||
|
index: Hashable | None = ...,
|
||
|
encoding: str | None = ...,
|
||
|
chunksize: None = ...,
|
||
|
iterator: bool = ...,
|
||
|
compression: CompressionOptions = ...,
|
||
|
) -> DataFrame | ReaderBase:
|
||
|
...
|
||
|
|
||
|
|
||
|
@doc(decompression_options=_shared_docs["decompression_options"] % "filepath_or_buffer")
|
||
|
def read_sas(
|
||
|
filepath_or_buffer: FilePath | ReadBuffer[bytes],
|
||
|
*,
|
||
|
format: str | None = None,
|
||
|
index: Hashable | None = None,
|
||
|
encoding: str | None = None,
|
||
|
chunksize: int | None = None,
|
||
|
iterator: bool = False,
|
||
|
compression: CompressionOptions = "infer",
|
||
|
) -> DataFrame | ReaderBase:
|
||
|
"""
|
||
|
Read SAS files stored as either XPORT or SAS7BDAT format files.
|
||
|
|
||
|
Parameters
|
||
|
----------
|
||
|
filepath_or_buffer : str, path object, or file-like object
|
||
|
String, path object (implementing ``os.PathLike[str]``), or file-like
|
||
|
object implementing a binary ``read()`` function. The string could be a URL.
|
||
|
Valid URL schemes include http, ftp, s3, and file. For file URLs, a host is
|
||
|
expected. A local file could be:
|
||
|
``file://localhost/path/to/table.sas7bdat``.
|
||
|
format : str {{'xport', 'sas7bdat'}} or None
|
||
|
If None, file format is inferred from file extension. If 'xport' or
|
||
|
'sas7bdat', uses the corresponding format.
|
||
|
index : identifier of index column, defaults to None
|
||
|
Identifier of column that should be used as index of the DataFrame.
|
||
|
encoding : str, default is None
|
||
|
Encoding for text data. If None, text data are stored as raw bytes.
|
||
|
chunksize : int
|
||
|
Read file `chunksize` lines at a time, returns iterator.
|
||
|
|
||
|
.. versionchanged:: 1.2
|
||
|
|
||
|
``TextFileReader`` is a context manager.
|
||
|
iterator : bool, defaults to False
|
||
|
If True, returns an iterator for reading the file incrementally.
|
||
|
|
||
|
.. versionchanged:: 1.2
|
||
|
|
||
|
``TextFileReader`` is a context manager.
|
||
|
{decompression_options}
|
||
|
|
||
|
Returns
|
||
|
-------
|
||
|
DataFrame if iterator=False and chunksize=None, else SAS7BDATReader
|
||
|
or XportReader
|
||
|
"""
|
||
|
if format is None:
|
||
|
buffer_error_msg = (
|
||
|
"If this is a buffer object rather "
|
||
|
"than a string name, you must specify a format string"
|
||
|
)
|
||
|
filepath_or_buffer = stringify_path(filepath_or_buffer)
|
||
|
if not isinstance(filepath_or_buffer, str):
|
||
|
raise ValueError(buffer_error_msg)
|
||
|
fname = filepath_or_buffer.lower()
|
||
|
if ".xpt" in fname:
|
||
|
format = "xport"
|
||
|
elif ".sas7bdat" in fname:
|
||
|
format = "sas7bdat"
|
||
|
else:
|
||
|
raise ValueError(
|
||
|
f"unable to infer format of SAS file from filename: {repr(fname)}"
|
||
|
)
|
||
|
|
||
|
reader: ReaderBase
|
||
|
if format.lower() == "xport":
|
||
|
from pandas.io.sas.sas_xport import XportReader
|
||
|
|
||
|
reader = XportReader(
|
||
|
filepath_or_buffer,
|
||
|
index=index,
|
||
|
encoding=encoding,
|
||
|
chunksize=chunksize,
|
||
|
compression=compression,
|
||
|
)
|
||
|
elif format.lower() == "sas7bdat":
|
||
|
from pandas.io.sas.sas7bdat import SAS7BDATReader
|
||
|
|
||
|
reader = SAS7BDATReader(
|
||
|
filepath_or_buffer,
|
||
|
index=index,
|
||
|
encoding=encoding,
|
||
|
chunksize=chunksize,
|
||
|
compression=compression,
|
||
|
)
|
||
|
else:
|
||
|
raise ValueError("unknown SAS format")
|
||
|
|
||
|
if iterator or chunksize:
|
||
|
return reader
|
||
|
|
||
|
with reader:
|
||
|
return reader.read()
|