Intelegentny_Pszczelarz/.venv/Lib/site-packages/scipy/interpolate/_cubic.py

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"""Interpolation algorithms using piecewise cubic polynomials."""
import numpy as np
from . import PPoly
from ._polyint import _isscalar
from scipy.linalg import solve_banded, solve
__all__ = ["CubicHermiteSpline", "PchipInterpolator", "pchip_interpolate",
"Akima1DInterpolator", "CubicSpline"]
def prepare_input(x, y, axis, dydx=None):
"""Prepare input for cubic spline interpolators.
All data are converted to numpy arrays and checked for correctness.
Axes equal to `axis` of arrays `y` and `dydx` are moved to be the 0th
axis. The value of `axis` is converted to lie in
[0, number of dimensions of `y`).
"""
x, y = map(np.asarray, (x, y))
if np.issubdtype(x.dtype, np.complexfloating):
raise ValueError("`x` must contain real values.")
x = x.astype(float)
if np.issubdtype(y.dtype, np.complexfloating):
dtype = complex
else:
dtype = float
if dydx is not None:
dydx = np.asarray(dydx)
if y.shape != dydx.shape:
raise ValueError("The shapes of `y` and `dydx` must be identical.")
if np.issubdtype(dydx.dtype, np.complexfloating):
dtype = complex
dydx = dydx.astype(dtype, copy=False)
y = y.astype(dtype, copy=False)
axis = axis % y.ndim
if x.ndim != 1:
raise ValueError("`x` must be 1-dimensional.")
if x.shape[0] < 2:
raise ValueError("`x` must contain at least 2 elements.")
if x.shape[0] != y.shape[axis]:
raise ValueError("The length of `y` along `axis`={0} doesn't "
"match the length of `x`".format(axis))
if not np.all(np.isfinite(x)):
raise ValueError("`x` must contain only finite values.")
if not np.all(np.isfinite(y)):
raise ValueError("`y` must contain only finite values.")
if dydx is not None and not np.all(np.isfinite(dydx)):
raise ValueError("`dydx` must contain only finite values.")
dx = np.diff(x)
if np.any(dx <= 0):
raise ValueError("`x` must be strictly increasing sequence.")
y = np.moveaxis(y, axis, 0)
if dydx is not None:
dydx = np.moveaxis(dydx, axis, 0)
return x, dx, y, axis, dydx
class CubicHermiteSpline(PPoly):
"""Piecewise-cubic interpolator matching values and first derivatives.
The result is represented as a `PPoly` instance.
Parameters
----------
x : array_like, shape (n,)
1-D array containing values of the independent variable.
Values must be real, finite and in strictly increasing order.
y : array_like
Array containing values of the dependent variable. It can have
arbitrary number of dimensions, but the length along ``axis``
(see below) must match the length of ``x``. Values must be finite.
dydx : array_like
Array containing derivatives of the dependent variable. It can have
arbitrary number of dimensions, but the length along ``axis``
(see below) must match the length of ``x``. Values must be finite.
axis : int, optional
Axis along which `y` is assumed to be varying. Meaning that for
``x[i]`` the corresponding values are ``np.take(y, i, axis=axis)``.
Default is 0.
extrapolate : {bool, 'periodic', None}, optional
If bool, determines whether to extrapolate to out-of-bounds points
based on first and last intervals, or to return NaNs. If 'periodic',
periodic extrapolation is used. If None (default), it is set to True.
Attributes
----------
x : ndarray, shape (n,)
Breakpoints. The same ``x`` which was passed to the constructor.
c : ndarray, shape (4, n-1, ...)
Coefficients of the polynomials on each segment. The trailing
dimensions match the dimensions of `y`, excluding ``axis``.
For example, if `y` is 1-D, then ``c[k, i]`` is a coefficient for
``(x-x[i])**(3-k)`` on the segment between ``x[i]`` and ``x[i+1]``.
axis : int
Interpolation axis. The same axis which was passed to the
constructor.
Methods
-------
__call__
derivative
antiderivative
integrate
roots
See Also
--------
Akima1DInterpolator : Akima 1D interpolator.
PchipInterpolator : PCHIP 1-D monotonic cubic interpolator.
CubicSpline : Cubic spline data interpolator.
PPoly : Piecewise polynomial in terms of coefficients and breakpoints
Notes
-----
If you want to create a higher-order spline matching higher-order
derivatives, use `BPoly.from_derivatives`.
References
----------
.. [1] `Cubic Hermite spline
<https://en.wikipedia.org/wiki/Cubic_Hermite_spline>`_
on Wikipedia.
"""
def __init__(self, x, y, dydx, axis=0, extrapolate=None):
if extrapolate is None:
extrapolate = True
x, dx, y, axis, dydx = prepare_input(x, y, axis, dydx)
dxr = dx.reshape([dx.shape[0]] + [1] * (y.ndim - 1))
slope = np.diff(y, axis=0) / dxr
t = (dydx[:-1] + dydx[1:] - 2 * slope) / dxr
c = np.empty((4, len(x) - 1) + y.shape[1:], dtype=t.dtype)
c[0] = t / dxr
c[1] = (slope - dydx[:-1]) / dxr - t
c[2] = dydx[:-1]
c[3] = y[:-1]
super().__init__(c, x, extrapolate=extrapolate)
self.axis = axis
class PchipInterpolator(CubicHermiteSpline):
r"""PCHIP 1-D monotonic cubic interpolation.
``x`` and ``y`` are arrays of values used to approximate some function f,
with ``y = f(x)``. The interpolant uses monotonic cubic splines
to find the value of new points. (PCHIP stands for Piecewise Cubic
Hermite Interpolating Polynomial).
Parameters
----------
x : ndarray
A 1-D array of monotonically increasing real values. ``x`` cannot
include duplicate values (otherwise f is overspecified)
y : ndarray
A 1-D array of real values. ``y``'s length along the interpolation
axis must be equal to the length of ``x``. If N-D array, use ``axis``
parameter to select correct axis.
axis : int, optional
Axis in the y array corresponding to the x-coordinate values.
extrapolate : bool, optional
Whether to extrapolate to out-of-bounds points based on first
and last intervals, or to return NaNs.
Methods
-------
__call__
derivative
antiderivative
roots
See Also
--------
CubicHermiteSpline : Piecewise-cubic interpolator.
Akima1DInterpolator : Akima 1D interpolator.
CubicSpline : Cubic spline data interpolator.
PPoly : Piecewise polynomial in terms of coefficients and breakpoints.
Notes
-----
The interpolator preserves monotonicity in the interpolation data and does
not overshoot if the data is not smooth.
The first derivatives are guaranteed to be continuous, but the second
derivatives may jump at :math:`x_k`.
Determines the derivatives at the points :math:`x_k`, :math:`f'_k`,
by using PCHIP algorithm [1]_.
Let :math:`h_k = x_{k+1} - x_k`, and :math:`d_k = (y_{k+1} - y_k) / h_k`
are the slopes at internal points :math:`x_k`.
If the signs of :math:`d_k` and :math:`d_{k-1}` are different or either of
them equals zero, then :math:`f'_k = 0`. Otherwise, it is given by the
weighted harmonic mean
.. math::
\frac{w_1 + w_2}{f'_k} = \frac{w_1}{d_{k-1}} + \frac{w_2}{d_k}
where :math:`w_1 = 2 h_k + h_{k-1}` and :math:`w_2 = h_k + 2 h_{k-1}`.
The end slopes are set using a one-sided scheme [2]_.
References
----------
.. [1] F. N. Fritsch and J. Butland,
A method for constructing local
monotone piecewise cubic interpolants,
SIAM J. Sci. Comput., 5(2), 300-304 (1984).
:doi:`10.1137/0905021`.
.. [2] see, e.g., C. Moler, Numerical Computing with Matlab, 2004.
:doi:`10.1137/1.9780898717952`
"""
def __init__(self, x, y, axis=0, extrapolate=None):
x, _, y, axis, _ = prepare_input(x, y, axis)
xp = x.reshape((x.shape[0],) + (1,)*(y.ndim-1))
dk = self._find_derivatives(xp, y)
super().__init__(x, y, dk, axis=0, extrapolate=extrapolate)
self.axis = axis
@staticmethod
def _edge_case(h0, h1, m0, m1):
# one-sided three-point estimate for the derivative
d = ((2*h0 + h1)*m0 - h0*m1) / (h0 + h1)
# try to preserve shape
mask = np.sign(d) != np.sign(m0)
mask2 = (np.sign(m0) != np.sign(m1)) & (np.abs(d) > 3.*np.abs(m0))
mmm = (~mask) & mask2
d[mask] = 0.
d[mmm] = 3.*m0[mmm]
return d
@staticmethod
def _find_derivatives(x, y):
# Determine the derivatives at the points y_k, d_k, by using
# PCHIP algorithm is:
# We choose the derivatives at the point x_k by
# Let m_k be the slope of the kth segment (between k and k+1)
# If m_k=0 or m_{k-1}=0 or sgn(m_k) != sgn(m_{k-1}) then d_k == 0
# else use weighted harmonic mean:
# w_1 = 2h_k + h_{k-1}, w_2 = h_k + 2h_{k-1}
# 1/d_k = 1/(w_1 + w_2)*(w_1 / m_k + w_2 / m_{k-1})
# where h_k is the spacing between x_k and x_{k+1}
y_shape = y.shape
if y.ndim == 1:
# So that _edge_case doesn't end up assigning to scalars
x = x[:, None]
y = y[:, None]
hk = x[1:] - x[:-1]
mk = (y[1:] - y[:-1]) / hk
if y.shape[0] == 2:
# edge case: only have two points, use linear interpolation
dk = np.zeros_like(y)
dk[0] = mk
dk[1] = mk
return dk.reshape(y_shape)
smk = np.sign(mk)
condition = (smk[1:] != smk[:-1]) | (mk[1:] == 0) | (mk[:-1] == 0)
w1 = 2*hk[1:] + hk[:-1]
w2 = hk[1:] + 2*hk[:-1]
# values where division by zero occurs will be excluded
# by 'condition' afterwards
with np.errstate(divide='ignore', invalid='ignore'):
whmean = (w1/mk[:-1] + w2/mk[1:]) / (w1 + w2)
dk = np.zeros_like(y)
dk[1:-1][condition] = 0.0
dk[1:-1][~condition] = 1.0 / whmean[~condition]
# special case endpoints, as suggested in
# Cleve Moler, Numerical Computing with MATLAB, Chap 3.6 (pchiptx.m)
dk[0] = PchipInterpolator._edge_case(hk[0], hk[1], mk[0], mk[1])
dk[-1] = PchipInterpolator._edge_case(hk[-1], hk[-2], mk[-1], mk[-2])
return dk.reshape(y_shape)
def pchip_interpolate(xi, yi, x, der=0, axis=0):
"""
Convenience function for pchip interpolation.
xi and yi are arrays of values used to approximate some function f,
with ``yi = f(xi)``. The interpolant uses monotonic cubic splines
to find the value of new points x and the derivatives there.
See `scipy.interpolate.PchipInterpolator` for details.
Parameters
----------
xi : array_like
A sorted list of x-coordinates, of length N.
yi : array_like
A 1-D array of real values. `yi`'s length along the interpolation
axis must be equal to the length of `xi`. If N-D array, use axis
parameter to select correct axis.
x : scalar or array_like
Of length M.
der : int or list, optional
Derivatives to extract. The 0th derivative can be included to
return the function value.
axis : int, optional
Axis in the yi array corresponding to the x-coordinate values.
See Also
--------
PchipInterpolator : PCHIP 1-D monotonic cubic interpolator.
Returns
-------
y : scalar or array_like
The result, of length R or length M or M by R,
Examples
--------
We can interpolate 2D observed data using pchip interpolation:
>>> import numpy as np
>>> import matplotlib.pyplot as plt
>>> from scipy.interpolate import pchip_interpolate
>>> x_observed = np.linspace(0.0, 10.0, 11)
>>> y_observed = np.sin(x_observed)
>>> x = np.linspace(min(x_observed), max(x_observed), num=100)
>>> y = pchip_interpolate(x_observed, y_observed, x)
>>> plt.plot(x_observed, y_observed, "o", label="observation")
>>> plt.plot(x, y, label="pchip interpolation")
>>> plt.legend()
>>> plt.show()
"""
P = PchipInterpolator(xi, yi, axis=axis)
if der == 0:
return P(x)
elif _isscalar(der):
return P.derivative(der)(x)
else:
return [P.derivative(nu)(x) for nu in der]
class Akima1DInterpolator(CubicHermiteSpline):
"""
Akima interpolator
Fit piecewise cubic polynomials, given vectors x and y. The interpolation
method by Akima uses a continuously differentiable sub-spline built from
piecewise cubic polynomials. The resultant curve passes through the given
data points and will appear smooth and natural.
Parameters
----------
x : ndarray, shape (m, )
1-D array of monotonically increasing real values.
y : ndarray, shape (m, ...)
N-D array of real values. The length of ``y`` along the first axis
must be equal to the length of ``x``.
axis : int, optional
Specifies the axis of ``y`` along which to interpolate. Interpolation
defaults to the first axis of ``y``.
Methods
-------
__call__
derivative
antiderivative
roots
See Also
--------
PchipInterpolator : PCHIP 1-D monotonic cubic interpolator.
CubicSpline : Cubic spline data interpolator.
PPoly : Piecewise polynomial in terms of coefficients and breakpoints
Notes
-----
.. versionadded:: 0.14
Use only for precise data, as the fitted curve passes through the given
points exactly. This routine is useful for plotting a pleasingly smooth
curve through a few given points for purposes of plotting.
References
----------
[1] A new method of interpolation and smooth curve fitting based
on local procedures. Hiroshi Akima, J. ACM, October 1970, 17(4),
589-602.
"""
def __init__(self, x, y, axis=0):
# Original implementation in MATLAB by N. Shamsundar (BSD licensed), see
# https://www.mathworks.com/matlabcentral/fileexchange/1814-akima-interpolation
x, dx, y, axis, _ = prepare_input(x, y, axis)
# determine slopes between breakpoints
m = np.empty((x.size + 3, ) + y.shape[1:])
dx = dx[(slice(None), ) + (None, ) * (y.ndim - 1)]
m[2:-2] = np.diff(y, axis=0) / dx
# add two additional points on the left ...
m[1] = 2. * m[2] - m[3]
m[0] = 2. * m[1] - m[2]
# ... and on the right
m[-2] = 2. * m[-3] - m[-4]
m[-1] = 2. * m[-2] - m[-3]
# if m1 == m2 != m3 == m4, the slope at the breakpoint is not
# defined. This is the fill value:
t = .5 * (m[3:] + m[:-3])
# get the denominator of the slope t
dm = np.abs(np.diff(m, axis=0))
f1 = dm[2:]
f2 = dm[:-2]
f12 = f1 + f2
# These are the mask of where the slope at breakpoint is defined:
ind = np.nonzero(f12 > 1e-9 * np.max(f12, initial=-np.inf))
x_ind, y_ind = ind[0], ind[1:]
# Set the slope at breakpoint
t[ind] = (f1[ind] * m[(x_ind + 1,) + y_ind] +
f2[ind] * m[(x_ind + 2,) + y_ind]) / f12[ind]
super().__init__(x, y, t, axis=0, extrapolate=False)
self.axis = axis
def extend(self, c, x, right=True):
raise NotImplementedError("Extending a 1-D Akima interpolator is not "
"yet implemented")
# These are inherited from PPoly, but they do not produce an Akima
# interpolator. Hence stub them out.
@classmethod
def from_spline(cls, tck, extrapolate=None):
raise NotImplementedError("This method does not make sense for "
"an Akima interpolator.")
@classmethod
def from_bernstein_basis(cls, bp, extrapolate=None):
raise NotImplementedError("This method does not make sense for "
"an Akima interpolator.")
class CubicSpline(CubicHermiteSpline):
"""Cubic spline data interpolator.
Interpolate data with a piecewise cubic polynomial which is twice
continuously differentiable [1]_. The result is represented as a `PPoly`
instance with breakpoints matching the given data.
Parameters
----------
x : array_like, shape (n,)
1-D array containing values of the independent variable.
Values must be real, finite and in strictly increasing order.
y : array_like
Array containing values of the dependent variable. It can have
arbitrary number of dimensions, but the length along ``axis``
(see below) must match the length of ``x``. Values must be finite.
axis : int, optional
Axis along which `y` is assumed to be varying. Meaning that for
``x[i]`` the corresponding values are ``np.take(y, i, axis=axis)``.
Default is 0.
bc_type : string or 2-tuple, optional
Boundary condition type. Two additional equations, given by the
boundary conditions, are required to determine all coefficients of
polynomials on each segment [2]_.
If `bc_type` is a string, then the specified condition will be applied
at both ends of a spline. Available conditions are:
* 'not-a-knot' (default): The first and second segment at a curve end
are the same polynomial. It is a good default when there is no
information on boundary conditions.
* 'periodic': The interpolated functions is assumed to be periodic
of period ``x[-1] - x[0]``. The first and last value of `y` must be
identical: ``y[0] == y[-1]``. This boundary condition will result in
``y'[0] == y'[-1]`` and ``y''[0] == y''[-1]``.
* 'clamped': The first derivative at curves ends are zero. Assuming
a 1D `y`, ``bc_type=((1, 0.0), (1, 0.0))`` is the same condition.
* 'natural': The second derivative at curve ends are zero. Assuming
a 1D `y`, ``bc_type=((2, 0.0), (2, 0.0))`` is the same condition.
If `bc_type` is a 2-tuple, the first and the second value will be
applied at the curve start and end respectively. The tuple values can
be one of the previously mentioned strings (except 'periodic') or a
tuple `(order, deriv_values)` allowing to specify arbitrary
derivatives at curve ends:
* `order`: the derivative order, 1 or 2.
* `deriv_value`: array_like containing derivative values, shape must
be the same as `y`, excluding ``axis`` dimension. For example, if
`y` is 1-D, then `deriv_value` must be a scalar. If `y` is 3-D with
the shape (n0, n1, n2) and axis=2, then `deriv_value` must be 2-D
and have the shape (n0, n1).
extrapolate : {bool, 'periodic', None}, optional
If bool, determines whether to extrapolate to out-of-bounds points
based on first and last intervals, or to return NaNs. If 'periodic',
periodic extrapolation is used. If None (default), ``extrapolate`` is
set to 'periodic' for ``bc_type='periodic'`` and to True otherwise.
Attributes
----------
x : ndarray, shape (n,)
Breakpoints. The same ``x`` which was passed to the constructor.
c : ndarray, shape (4, n-1, ...)
Coefficients of the polynomials on each segment. The trailing
dimensions match the dimensions of `y`, excluding ``axis``.
For example, if `y` is 1-d, then ``c[k, i]`` is a coefficient for
``(x-x[i])**(3-k)`` on the segment between ``x[i]`` and ``x[i+1]``.
axis : int
Interpolation axis. The same axis which was passed to the
constructor.
Methods
-------
__call__
derivative
antiderivative
integrate
roots
See Also
--------
Akima1DInterpolator : Akima 1D interpolator.
PchipInterpolator : PCHIP 1-D monotonic cubic interpolator.
PPoly : Piecewise polynomial in terms of coefficients and breakpoints.
Notes
-----
Parameters `bc_type` and ``extrapolate`` work independently, i.e. the
former controls only construction of a spline, and the latter only
evaluation.
When a boundary condition is 'not-a-knot' and n = 2, it is replaced by
a condition that the first derivative is equal to the linear interpolant
slope. When both boundary conditions are 'not-a-knot' and n = 3, the
solution is sought as a parabola passing through given points.
When 'not-a-knot' boundary conditions is applied to both ends, the
resulting spline will be the same as returned by `splrep` (with ``s=0``)
and `InterpolatedUnivariateSpline`, but these two methods use a
representation in B-spline basis.
.. versionadded:: 0.18.0
Examples
--------
In this example the cubic spline is used to interpolate a sampled sinusoid.
You can see that the spline continuity property holds for the first and
second derivatives and violates only for the third derivative.
>>> import numpy as np
>>> from scipy.interpolate import CubicSpline
>>> import matplotlib.pyplot as plt
>>> x = np.arange(10)
>>> y = np.sin(x)
>>> cs = CubicSpline(x, y)
>>> xs = np.arange(-0.5, 9.6, 0.1)
>>> fig, ax = plt.subplots(figsize=(6.5, 4))
>>> ax.plot(x, y, 'o', label='data')
>>> ax.plot(xs, np.sin(xs), label='true')
>>> ax.plot(xs, cs(xs), label="S")
>>> ax.plot(xs, cs(xs, 1), label="S'")
>>> ax.plot(xs, cs(xs, 2), label="S''")
>>> ax.plot(xs, cs(xs, 3), label="S'''")
>>> ax.set_xlim(-0.5, 9.5)
>>> ax.legend(loc='lower left', ncol=2)
>>> plt.show()
In the second example, the unit circle is interpolated with a spline. A
periodic boundary condition is used. You can see that the first derivative
values, ds/dx=0, ds/dy=1 at the periodic point (1, 0) are correctly
computed. Note that a circle cannot be exactly represented by a cubic
spline. To increase precision, more breakpoints would be required.
>>> theta = 2 * np.pi * np.linspace(0, 1, 5)
>>> y = np.c_[np.cos(theta), np.sin(theta)]
>>> cs = CubicSpline(theta, y, bc_type='periodic')
>>> print("ds/dx={:.1f} ds/dy={:.1f}".format(cs(0, 1)[0], cs(0, 1)[1]))
ds/dx=0.0 ds/dy=1.0
>>> xs = 2 * np.pi * np.linspace(0, 1, 100)
>>> fig, ax = plt.subplots(figsize=(6.5, 4))
>>> ax.plot(y[:, 0], y[:, 1], 'o', label='data')
>>> ax.plot(np.cos(xs), np.sin(xs), label='true')
>>> ax.plot(cs(xs)[:, 0], cs(xs)[:, 1], label='spline')
>>> ax.axes.set_aspect('equal')
>>> ax.legend(loc='center')
>>> plt.show()
The third example is the interpolation of a polynomial y = x**3 on the
interval 0 <= x<= 1. A cubic spline can represent this function exactly.
To achieve that we need to specify values and first derivatives at
endpoints of the interval. Note that y' = 3 * x**2 and thus y'(0) = 0 and
y'(1) = 3.
>>> cs = CubicSpline([0, 1], [0, 1], bc_type=((1, 0), (1, 3)))
>>> x = np.linspace(0, 1)
>>> np.allclose(x**3, cs(x))
True
References
----------
.. [1] `Cubic Spline Interpolation
<https://en.wikiversity.org/wiki/Cubic_Spline_Interpolation>`_
on Wikiversity.
.. [2] Carl de Boor, "A Practical Guide to Splines", Springer-Verlag, 1978.
"""
def __init__(self, x, y, axis=0, bc_type='not-a-knot', extrapolate=None):
x, dx, y, axis, _ = prepare_input(x, y, axis)
n = len(x)
bc, y = self._validate_bc(bc_type, y, y.shape[1:], axis)
if extrapolate is None:
if bc[0] == 'periodic':
extrapolate = 'periodic'
else:
extrapolate = True
if y.size == 0:
# bail out early for zero-sized arrays
s = np.zeros_like(y)
else:
dxr = dx.reshape([dx.shape[0]] + [1] * (y.ndim - 1))
slope = np.diff(y, axis=0) / dxr
# If bc is 'not-a-knot' this change is just a convention.
# If bc is 'periodic' then we already checked that y[0] == y[-1],
# and the spline is just a constant, we handle this case in the
# same way by setting the first derivatives to slope, which is 0.
if n == 2:
if bc[0] in ['not-a-knot', 'periodic']:
bc[0] = (1, slope[0])
if bc[1] in ['not-a-knot', 'periodic']:
bc[1] = (1, slope[0])
# This is a special case, when both conditions are 'not-a-knot'
# and n == 3. In this case 'not-a-knot' can't be handled regularly
# as the both conditions are identical. We handle this case by
# constructing a parabola passing through given points.
if n == 3 and bc[0] == 'not-a-knot' and bc[1] == 'not-a-knot':
A = np.zeros((3, 3)) # This is a standard matrix.
b = np.empty((3,) + y.shape[1:], dtype=y.dtype)
A[0, 0] = 1
A[0, 1] = 1
A[1, 0] = dx[1]
A[1, 1] = 2 * (dx[0] + dx[1])
A[1, 2] = dx[0]
A[2, 1] = 1
A[2, 2] = 1
b[0] = 2 * slope[0]
b[1] = 3 * (dxr[0] * slope[1] + dxr[1] * slope[0])
b[2] = 2 * slope[1]
s = solve(A, b, overwrite_a=True, overwrite_b=True,
check_finite=False)
elif n == 3 and bc[0] == 'periodic':
# In case when number of points is 3 we compute the derivatives
# manually
s = np.empty((n,) + y.shape[1:], dtype=y.dtype)
t = (slope / dxr).sum() / (1. / dxr).sum()
s.fill(t)
else:
# Find derivative values at each x[i] by solving a tridiagonal
# system.
A = np.zeros((3, n)) # This is a banded matrix representation.
b = np.empty((n,) + y.shape[1:], dtype=y.dtype)
# Filling the system for i=1..n-2
# (x[i-1] - x[i]) * s[i-1] +\
# 2 * ((x[i] - x[i-1]) + (x[i+1] - x[i])) * s[i] +\
# (x[i] - x[i-1]) * s[i+1] =\
# 3 * ((x[i+1] - x[i])*(y[i] - y[i-1])/(x[i] - x[i-1]) +\
# (x[i] - x[i-1])*(y[i+1] - y[i])/(x[i+1] - x[i]))
A[1, 1:-1] = 2 * (dx[:-1] + dx[1:]) # The diagonal
A[0, 2:] = dx[:-1] # The upper diagonal
A[-1, :-2] = dx[1:] # The lower diagonal
b[1:-1] = 3 * (dxr[1:] * slope[:-1] + dxr[:-1] * slope[1:])
bc_start, bc_end = bc
if bc_start == 'periodic':
# Due to the periodicity, and because y[-1] = y[0], the
# linear system has (n-1) unknowns/equations instead of n:
A = A[:, 0:-1]
A[1, 0] = 2 * (dx[-1] + dx[0])
A[0, 1] = dx[-1]
b = b[:-1]
# Also, due to the periodicity, the system is not tri-diagonal.
# We need to compute a "condensed" matrix of shape (n-2, n-2).
# See https://web.archive.org/web/20151220180652/http://www.cfm.brown.edu/people/gk/chap6/node14.html
# for more explanations.
# The condensed matrix is obtained by removing the last column
# and last row of the (n-1, n-1) system matrix. The removed
# values are saved in scalar variables with the (n-1, n-1)
# system matrix indices forming their names:
a_m1_0 = dx[-2] # lower left corner value: A[-1, 0]
a_m1_m2 = dx[-1]
a_m1_m1 = 2 * (dx[-1] + dx[-2])
a_m2_m1 = dx[-3]
a_0_m1 = dx[0]
b[0] = 3 * (dxr[0] * slope[-1] + dxr[-1] * slope[0])
b[-1] = 3 * (dxr[-1] * slope[-2] + dxr[-2] * slope[-1])
Ac = A[:, :-1]
b1 = b[:-1]
b2 = np.zeros_like(b1)
b2[0] = -a_0_m1
b2[-1] = -a_m2_m1
# s1 and s2 are the solutions of (n-2, n-2) system
s1 = solve_banded((1, 1), Ac, b1, overwrite_ab=False,
overwrite_b=False, check_finite=False)
s2 = solve_banded((1, 1), Ac, b2, overwrite_ab=False,
overwrite_b=False, check_finite=False)
# computing the s[n-2] solution:
s_m1 = ((b[-1] - a_m1_0 * s1[0] - a_m1_m2 * s1[-1]) /
(a_m1_m1 + a_m1_0 * s2[0] + a_m1_m2 * s2[-1]))
# s is the solution of the (n, n) system:
s = np.empty((n,) + y.shape[1:], dtype=y.dtype)
s[:-2] = s1 + s_m1 * s2
s[-2] = s_m1
s[-1] = s[0]
else:
if bc_start == 'not-a-knot':
A[1, 0] = dx[1]
A[0, 1] = x[2] - x[0]
d = x[2] - x[0]
b[0] = ((dxr[0] + 2*d) * dxr[1] * slope[0] +
dxr[0]**2 * slope[1]) / d
elif bc_start[0] == 1:
A[1, 0] = 1
A[0, 1] = 0
b[0] = bc_start[1]
elif bc_start[0] == 2:
A[1, 0] = 2 * dx[0]
A[0, 1] = dx[0]
b[0] = -0.5 * bc_start[1] * dx[0]**2 + 3 * (y[1] - y[0])
if bc_end == 'not-a-knot':
A[1, -1] = dx[-2]
A[-1, -2] = x[-1] - x[-3]
d = x[-1] - x[-3]
b[-1] = ((dxr[-1]**2*slope[-2] +
(2*d + dxr[-1])*dxr[-2]*slope[-1]) / d)
elif bc_end[0] == 1:
A[1, -1] = 1
A[-1, -2] = 0
b[-1] = bc_end[1]
elif bc_end[0] == 2:
A[1, -1] = 2 * dx[-1]
A[-1, -2] = dx[-1]
b[-1] = 0.5 * bc_end[1] * dx[-1]**2 + 3 * (y[-1] - y[-2])
s = solve_banded((1, 1), A, b, overwrite_ab=True,
overwrite_b=True, check_finite=False)
super().__init__(x, y, s, axis=0, extrapolate=extrapolate)
self.axis = axis
@staticmethod
def _validate_bc(bc_type, y, expected_deriv_shape, axis):
"""Validate and prepare boundary conditions.
Returns
-------
validated_bc : 2-tuple
Boundary conditions for a curve start and end.
y : ndarray
y casted to complex dtype if one of the boundary conditions has
complex dtype.
"""
if isinstance(bc_type, str):
if bc_type == 'periodic':
if not np.allclose(y[0], y[-1], rtol=1e-15, atol=1e-15):
raise ValueError(
"The first and last `y` point along axis {} must "
"be identical (within machine precision) when "
"bc_type='periodic'.".format(axis))
bc_type = (bc_type, bc_type)
else:
if len(bc_type) != 2:
raise ValueError("`bc_type` must contain 2 elements to "
"specify start and end conditions.")
if 'periodic' in bc_type:
raise ValueError("'periodic' `bc_type` is defined for both "
"curve ends and cannot be used with other "
"boundary conditions.")
validated_bc = []
for bc in bc_type:
if isinstance(bc, str):
if bc == 'clamped':
validated_bc.append((1, np.zeros(expected_deriv_shape)))
elif bc == 'natural':
validated_bc.append((2, np.zeros(expected_deriv_shape)))
elif bc in ['not-a-knot', 'periodic']:
validated_bc.append(bc)
else:
raise ValueError("bc_type={} is not allowed.".format(bc))
else:
try:
deriv_order, deriv_value = bc
except Exception as e:
raise ValueError(
"A specified derivative value must be "
"given in the form (order, value)."
) from e
if deriv_order not in [1, 2]:
raise ValueError("The specified derivative order must "
"be 1 or 2.")
deriv_value = np.asarray(deriv_value)
if deriv_value.shape != expected_deriv_shape:
raise ValueError(
"`deriv_value` shape {} is not the expected one {}."
.format(deriv_value.shape, expected_deriv_shape))
if np.issubdtype(deriv_value.dtype, np.complexfloating):
y = y.astype(complex, copy=False)
validated_bc.append((deriv_order, deriv_value))
return validated_bc, y