Intelegentny_Pszczelarz/.venv/Lib/site-packages/sklearn/metrics/_dist_metrics.pxd

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Cython
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2023-06-19 00:49:18 +02:00
cimport numpy as cnp
from libc.math cimport sqrt, exp
from ..utils._typedefs cimport DTYPE_t, ITYPE_t, SPARSE_INDEX_TYPE_t
######################################################################
# Inline distance functions
#
# We use these for the default (euclidean) case so that they can be
# inlined. This leads to faster computation for the most common case
cdef inline DTYPE_t euclidean_dist(
const DTYPE_t* x1,
const DTYPE_t* x2,
ITYPE_t size,
) nogil except -1:
cdef DTYPE_t tmp, d=0
cdef cnp.intp_t j
for j in range(size):
tmp = <DTYPE_t> (x1[j] - x2[j])
d += tmp * tmp
return sqrt(d)
cdef inline DTYPE_t euclidean_rdist(
const DTYPE_t* x1,
const DTYPE_t* x2,
ITYPE_t size,
) nogil except -1:
cdef DTYPE_t tmp, d=0
cdef cnp.intp_t j
for j in range(size):
tmp = <DTYPE_t>(x1[j] - x2[j])
d += tmp * tmp
return d
cdef inline DTYPE_t euclidean_dist_to_rdist(const DTYPE_t dist) nogil except -1:
return dist * dist
cdef inline DTYPE_t euclidean_rdist_to_dist(const DTYPE_t dist) nogil except -1:
return sqrt(dist)
######################################################################
# DistanceMetric base class
cdef class DistanceMetric:
# The following attributes are required for a few of the subclasses.
# we must define them here so that cython's limited polymorphism will work.
# Because we don't expect to instantiate a lot of these objects, the
# extra memory overhead of this setup should not be an issue.
cdef DTYPE_t p
cdef DTYPE_t[::1] vec
cdef DTYPE_t[:, ::1] mat
cdef ITYPE_t size
cdef object func
cdef object kwargs
cdef DTYPE_t dist(
self,
const DTYPE_t* x1,
const DTYPE_t* x2,
ITYPE_t size,
) nogil except -1
cdef DTYPE_t rdist(
self,
const DTYPE_t* x1,
const DTYPE_t* x2,
ITYPE_t size,
) nogil except -1
cdef DTYPE_t dist_csr(
self,
const DTYPE_t* x1_data,
const SPARSE_INDEX_TYPE_t[:] x1_indices,
const DTYPE_t* x2_data,
const SPARSE_INDEX_TYPE_t[:] x2_indices,
const SPARSE_INDEX_TYPE_t x1_start,
const SPARSE_INDEX_TYPE_t x1_end,
const SPARSE_INDEX_TYPE_t x2_start,
const SPARSE_INDEX_TYPE_t x2_end,
const ITYPE_t size,
) nogil except -1
cdef DTYPE_t rdist_csr(
self,
const DTYPE_t* x1_data,
const SPARSE_INDEX_TYPE_t[:] x1_indices,
const DTYPE_t* x2_data,
const SPARSE_INDEX_TYPE_t[:] x2_indices,
const SPARSE_INDEX_TYPE_t x1_start,
const SPARSE_INDEX_TYPE_t x1_end,
const SPARSE_INDEX_TYPE_t x2_start,
const SPARSE_INDEX_TYPE_t x2_end,
const ITYPE_t size,
) nogil except -1
cdef int pdist(
self,
const DTYPE_t[:, ::1] X,
DTYPE_t[:, ::1] D,
) except -1
cdef int cdist(
self,
const DTYPE_t[:, ::1] X,
const DTYPE_t[:, ::1] Y,
DTYPE_t[:, ::1] D,
) except -1
cdef int pdist_csr(
self,
const DTYPE_t* x1_data,
const SPARSE_INDEX_TYPE_t[:] x1_indices,
const SPARSE_INDEX_TYPE_t[:] x1_indptr,
const ITYPE_t size,
DTYPE_t[:, ::1] D,
) nogil except -1
cdef int cdist_csr(
self,
const DTYPE_t* x1_data,
const SPARSE_INDEX_TYPE_t[:] x1_indices,
const SPARSE_INDEX_TYPE_t[:] x1_indptr,
const DTYPE_t* x2_data,
const SPARSE_INDEX_TYPE_t[:] x2_indices,
const SPARSE_INDEX_TYPE_t[:] x2_indptr,
const ITYPE_t size,
DTYPE_t[:, ::1] D,
) nogil except -1
cdef DTYPE_t _rdist_to_dist(self, DTYPE_t rdist) nogil except -1
cdef DTYPE_t _dist_to_rdist(self, DTYPE_t dist) nogil except -1
######################################################################
# Inline distance functions
#
# We use these for the default (euclidean) case so that they can be
# inlined. This leads to faster computation for the most common case
cdef inline DTYPE_t euclidean_dist32(
const cnp.float32_t* x1,
const cnp.float32_t* x2,
ITYPE_t size,
) nogil except -1:
cdef DTYPE_t tmp, d=0
cdef cnp.intp_t j
for j in range(size):
tmp = <DTYPE_t> (x1[j] - x2[j])
d += tmp * tmp
return sqrt(d)
cdef inline DTYPE_t euclidean_rdist32(
const cnp.float32_t* x1,
const cnp.float32_t* x2,
ITYPE_t size,
) nogil except -1:
cdef DTYPE_t tmp, d=0
cdef cnp.intp_t j
for j in range(size):
tmp = <DTYPE_t>(x1[j] - x2[j])
d += tmp * tmp
return d
cdef inline DTYPE_t euclidean_dist_to_rdist32(const cnp.float32_t dist) nogil except -1:
return dist * dist
cdef inline DTYPE_t euclidean_rdist_to_dist32(const cnp.float32_t dist) nogil except -1:
return sqrt(dist)
######################################################################
# DistanceMetric32 base class
cdef class DistanceMetric32:
# The following attributes are required for a few of the subclasses.
# we must define them here so that cython's limited polymorphism will work.
# Because we don't expect to instantiate a lot of these objects, the
# extra memory overhead of this setup should not be an issue.
cdef DTYPE_t p
cdef DTYPE_t[::1] vec
cdef DTYPE_t[:, ::1] mat
cdef ITYPE_t size
cdef object func
cdef object kwargs
cdef DTYPE_t dist(
self,
const cnp.float32_t* x1,
const cnp.float32_t* x2,
ITYPE_t size,
) nogil except -1
cdef DTYPE_t rdist(
self,
const cnp.float32_t* x1,
const cnp.float32_t* x2,
ITYPE_t size,
) nogil except -1
cdef DTYPE_t dist_csr(
self,
const cnp.float32_t* x1_data,
const SPARSE_INDEX_TYPE_t[:] x1_indices,
const cnp.float32_t* x2_data,
const SPARSE_INDEX_TYPE_t[:] x2_indices,
const SPARSE_INDEX_TYPE_t x1_start,
const SPARSE_INDEX_TYPE_t x1_end,
const SPARSE_INDEX_TYPE_t x2_start,
const SPARSE_INDEX_TYPE_t x2_end,
const ITYPE_t size,
) nogil except -1
cdef DTYPE_t rdist_csr(
self,
const cnp.float32_t* x1_data,
const SPARSE_INDEX_TYPE_t[:] x1_indices,
const cnp.float32_t* x2_data,
const SPARSE_INDEX_TYPE_t[:] x2_indices,
const SPARSE_INDEX_TYPE_t x1_start,
const SPARSE_INDEX_TYPE_t x1_end,
const SPARSE_INDEX_TYPE_t x2_start,
const SPARSE_INDEX_TYPE_t x2_end,
const ITYPE_t size,
) nogil except -1
cdef int pdist(
self,
const cnp.float32_t[:, ::1] X,
DTYPE_t[:, ::1] D,
) except -1
cdef int cdist(
self,
const cnp.float32_t[:, ::1] X,
const cnp.float32_t[:, ::1] Y,
DTYPE_t[:, ::1] D,
) except -1
cdef int pdist_csr(
self,
const cnp.float32_t* x1_data,
const SPARSE_INDEX_TYPE_t[:] x1_indices,
const SPARSE_INDEX_TYPE_t[:] x1_indptr,
const ITYPE_t size,
DTYPE_t[:, ::1] D,
) nogil except -1
cdef int cdist_csr(
self,
const cnp.float32_t* x1_data,
const SPARSE_INDEX_TYPE_t[:] x1_indices,
const SPARSE_INDEX_TYPE_t[:] x1_indptr,
const cnp.float32_t* x2_data,
const SPARSE_INDEX_TYPE_t[:] x2_indices,
const SPARSE_INDEX_TYPE_t[:] x2_indptr,
const ITYPE_t size,
DTYPE_t[:, ::1] D,
) nogil except -1
cdef DTYPE_t _rdist_to_dist(self, cnp.float32_t rdist) nogil except -1
cdef DTYPE_t _dist_to_rdist(self, cnp.float32_t dist) nogil except -1