import pytest import numpy as np from numpy.testing import assert_array_equal, assert_equal from scipy.stats.contingency import crosstab @pytest.mark.parametrize('sparse', [False, True]) def test_crosstab_basic(sparse): a = [0, 0, 9, 9, 0, 0, 9] b = [2, 1, 3, 1, 2, 3, 3] expected_avals = [0, 9] expected_bvals = [1, 2, 3] expected_count = np.array([[1, 2, 1], [1, 0, 2]]) (avals, bvals), count = crosstab(a, b, sparse=sparse) assert_array_equal(avals, expected_avals) assert_array_equal(bvals, expected_bvals) if sparse: assert_array_equal(count.A, expected_count) else: assert_array_equal(count, expected_count) def test_crosstab_basic_1d(): # Verify that a single input sequence works as expected. x = [1, 2, 3, 1, 2, 3, 3] expected_xvals = [1, 2, 3] expected_count = np.array([2, 2, 3]) (xvals,), count = crosstab(x) assert_array_equal(xvals, expected_xvals) assert_array_equal(count, expected_count) def test_crosstab_basic_3d(): # Verify the function for three input sequences. a = 'a' b = 'b' x = [0, 0, 9, 9, 0, 0, 9, 9] y = [a, a, a, a, b, b, b, a] z = [1, 2, 3, 1, 2, 3, 3, 1] expected_xvals = [0, 9] expected_yvals = [a, b] expected_zvals = [1, 2, 3] expected_count = np.array([[[1, 1, 0], [0, 1, 1]], [[2, 0, 1], [0, 0, 1]]]) (xvals, yvals, zvals), count = crosstab(x, y, z) assert_array_equal(xvals, expected_xvals) assert_array_equal(yvals, expected_yvals) assert_array_equal(zvals, expected_zvals) assert_array_equal(count, expected_count) @pytest.mark.parametrize('sparse', [False, True]) def test_crosstab_levels(sparse): a = [0, 0, 9, 9, 0, 0, 9] b = [1, 2, 3, 1, 2, 3, 3] expected_avals = [0, 9] expected_bvals = [0, 1, 2, 3] expected_count = np.array([[0, 1, 2, 1], [0, 1, 0, 2]]) (avals, bvals), count = crosstab(a, b, levels=[None, [0, 1, 2, 3]], sparse=sparse) assert_array_equal(avals, expected_avals) assert_array_equal(bvals, expected_bvals) if sparse: assert_array_equal(count.A, expected_count) else: assert_array_equal(count, expected_count) @pytest.mark.parametrize('sparse', [False, True]) def test_crosstab_extra_levels(sparse): # The pair of values (-1, 3) will be ignored, because we explicitly # request the counted `a` values to be [0, 9]. a = [0, 0, 9, 9, 0, 0, 9, -1] b = [1, 2, 3, 1, 2, 3, 3, 3] expected_avals = [0, 9] expected_bvals = [0, 1, 2, 3] expected_count = np.array([[0, 1, 2, 1], [0, 1, 0, 2]]) (avals, bvals), count = crosstab(a, b, levels=[[0, 9], [0, 1, 2, 3]], sparse=sparse) assert_array_equal(avals, expected_avals) assert_array_equal(bvals, expected_bvals) if sparse: assert_array_equal(count.A, expected_count) else: assert_array_equal(count, expected_count) def test_validation_at_least_one(): with pytest.raises(TypeError, match='At least one'): crosstab() def test_validation_same_lengths(): with pytest.raises(ValueError, match='must have the same length'): crosstab([1, 2], [1, 2, 3, 4]) def test_validation_sparse_only_two_args(): with pytest.raises(ValueError, match='only two input sequences'): crosstab([0, 1, 1], [8, 8, 9], [1, 3, 3], sparse=True) def test_validation_len_levels_matches_args(): with pytest.raises(ValueError, match='number of input sequences'): crosstab([0, 1, 1], [8, 8, 9], levels=([0, 1, 2, 3],)) def test_result(): res = crosstab([0, 1], [1, 2]) assert_equal((res.elements, res.count), res)