"""Testing for bicluster metrics module""" import numpy as np from sklearn.utils._testing import assert_almost_equal from sklearn.metrics.cluster._bicluster import _jaccard from sklearn.metrics import consensus_score def test_jaccard(): a1 = np.array([True, True, False, False]) a2 = np.array([True, True, True, True]) a3 = np.array([False, True, True, False]) a4 = np.array([False, False, True, True]) assert _jaccard(a1, a1, a1, a1) == 1 assert _jaccard(a1, a1, a2, a2) == 0.25 assert _jaccard(a1, a1, a3, a3) == 1.0 / 7 assert _jaccard(a1, a1, a4, a4) == 0 def test_consensus_score(): a = [[True, True, False, False], [False, False, True, True]] b = a[::-1] assert consensus_score((a, a), (a, a)) == 1 assert consensus_score((a, a), (b, b)) == 1 assert consensus_score((a, b), (a, b)) == 1 assert consensus_score((a, b), (b, a)) == 1 assert consensus_score((a, a), (b, a)) == 0 assert consensus_score((a, a), (a, b)) == 0 assert consensus_score((b, b), (a, b)) == 0 assert consensus_score((b, b), (b, a)) == 0 def test_consensus_score_issue2445(): """Different number of biclusters in A and B""" a_rows = np.array( [ [True, True, False, False], [False, False, True, True], [False, False, False, True], ] ) a_cols = np.array( [ [True, True, False, False], [False, False, True, True], [False, False, False, True], ] ) idx = [0, 2] s = consensus_score((a_rows, a_cols), (a_rows[idx], a_cols[idx])) # B contains 2 of the 3 biclusters in A, so score should be 2/3 assert_almost_equal(s, 2.0 / 3.0)