import pickle import numpy as np import pytest from numpy.testing import assert_array_equal from sklearn.utils._encode import _unique from sklearn.utils._encode import _encode from sklearn.utils._encode import _check_unknown from sklearn.utils._encode import _get_counts @pytest.mark.parametrize( "values, expected", [ (np.array([2, 1, 3, 1, 3], dtype="int64"), np.array([1, 2, 3], dtype="int64")), ( np.array([2, 1, np.nan, 1, np.nan], dtype="float32"), np.array([1, 2, np.nan], dtype="float32"), ), ( np.array(["b", "a", "c", "a", "c"], dtype=object), np.array(["a", "b", "c"], dtype=object), ), ( np.array(["b", "a", None, "a", None], dtype=object), np.array(["a", "b", None], dtype=object), ), (np.array(["b", "a", "c", "a", "c"]), np.array(["a", "b", "c"])), ], ids=["int64", "float32-nan", "object", "object-None", "str"], ) def test_encode_util(values, expected): uniques = _unique(values) assert_array_equal(uniques, expected) result, encoded = _unique(values, return_inverse=True) assert_array_equal(result, expected) assert_array_equal(encoded, np.array([1, 0, 2, 0, 2])) encoded = _encode(values, uniques=uniques) assert_array_equal(encoded, np.array([1, 0, 2, 0, 2])) result, counts = _unique(values, return_counts=True) assert_array_equal(result, expected) assert_array_equal(counts, np.array([2, 1, 2])) result, encoded, counts = _unique(values, return_inverse=True, return_counts=True) assert_array_equal(result, expected) assert_array_equal(encoded, np.array([1, 0, 2, 0, 2])) assert_array_equal(counts, np.array([2, 1, 2])) def test_encode_with_check_unknown(): # test for the check_unknown parameter of _encode() uniques = np.array([1, 2, 3]) values = np.array([1, 2, 3, 4]) # Default is True, raise error with pytest.raises(ValueError, match="y contains previously unseen labels"): _encode(values, uniques=uniques, check_unknown=True) # dont raise error if False _encode(values, uniques=uniques, check_unknown=False) # parameter is ignored for object dtype uniques = np.array(["a", "b", "c"], dtype=object) values = np.array(["a", "b", "c", "d"], dtype=object) with pytest.raises(ValueError, match="y contains previously unseen labels"): _encode(values, uniques=uniques, check_unknown=False) def _assert_check_unknown(values, uniques, expected_diff, expected_mask): diff = _check_unknown(values, uniques) assert_array_equal(diff, expected_diff) diff, valid_mask = _check_unknown(values, uniques, return_mask=True) assert_array_equal(diff, expected_diff) assert_array_equal(valid_mask, expected_mask) @pytest.mark.parametrize( "values, uniques, expected_diff, expected_mask", [ (np.array([1, 2, 3, 4]), np.array([1, 2, 3]), [4], [True, True, True, False]), (np.array([2, 1, 4, 5]), np.array([2, 5, 1]), [4], [True, True, False, True]), (np.array([2, 1, np.nan]), np.array([2, 5, 1]), [np.nan], [True, True, False]), ( np.array([2, 1, 4, np.nan]), np.array([2, 5, 1, np.nan]), [4], [True, True, False, True], ), ( np.array([2, 1, 4, np.nan]), np.array([2, 5, 1]), [4, np.nan], [True, True, False, False], ), ( np.array([2, 1, 4, 5]), np.array([2, 5, 1, np.nan]), [4], [True, True, False, True], ), ( np.array(["a", "b", "c", "d"], dtype=object), np.array(["a", "b", "c"], dtype=object), np.array(["d"], dtype=object), [True, True, True, False], ), ( np.array(["d", "c", "a", "b"], dtype=object), np.array(["a", "c", "b"], dtype=object), np.array(["d"], dtype=object), [False, True, True, True], ), ( np.array(["a", "b", "c", "d"]), np.array(["a", "b", "c"]), np.array(["d"]), [True, True, True, False], ), ( np.array(["d", "c", "a", "b"]), np.array(["a", "c", "b"]), np.array(["d"]), [False, True, True, True], ), ], ) def test_check_unknown(values, uniques, expected_diff, expected_mask): _assert_check_unknown(values, uniques, expected_diff, expected_mask) @pytest.mark.parametrize("missing_value", [None, np.nan, float("nan")]) @pytest.mark.parametrize("pickle_uniques", [True, False]) def test_check_unknown_missing_values(missing_value, pickle_uniques): # check for check_unknown with missing values with object dtypes values = np.array(["d", "c", "a", "b", missing_value], dtype=object) uniques = np.array(["c", "a", "b", missing_value], dtype=object) if pickle_uniques: uniques = pickle.loads(pickle.dumps(uniques)) expected_diff = ["d"] expected_mask = [False, True, True, True, True] _assert_check_unknown(values, uniques, expected_diff, expected_mask) values = np.array(["d", "c", "a", "b", missing_value], dtype=object) uniques = np.array(["c", "a", "b"], dtype=object) if pickle_uniques: uniques = pickle.loads(pickle.dumps(uniques)) expected_diff = ["d", missing_value] expected_mask = [False, True, True, True, False] _assert_check_unknown(values, uniques, expected_diff, expected_mask) values = np.array(["a", missing_value], dtype=object) uniques = np.array(["a", "b", "z"], dtype=object) if pickle_uniques: uniques = pickle.loads(pickle.dumps(uniques)) expected_diff = [missing_value] expected_mask = [True, False] _assert_check_unknown(values, uniques, expected_diff, expected_mask) @pytest.mark.parametrize("missing_value", [np.nan, None, float("nan")]) @pytest.mark.parametrize("pickle_uniques", [True, False]) def test_unique_util_missing_values_objects(missing_value, pickle_uniques): # check for _unique and _encode with missing values with object dtypes values = np.array(["a", "c", "c", missing_value, "b"], dtype=object) expected_uniques = np.array(["a", "b", "c", missing_value], dtype=object) uniques = _unique(values) if missing_value is None: assert_array_equal(uniques, expected_uniques) else: # missing_value == np.nan assert_array_equal(uniques[:-1], expected_uniques[:-1]) assert np.isnan(uniques[-1]) if pickle_uniques: uniques = pickle.loads(pickle.dumps(uniques)) encoded = _encode(values, uniques=uniques) assert_array_equal(encoded, np.array([0, 2, 2, 3, 1])) def test_unique_util_missing_values_numeric(): # Check missing values in numerical values values = np.array([3, 1, np.nan, 5, 3, np.nan], dtype=float) expected_uniques = np.array([1, 3, 5, np.nan], dtype=float) expected_inverse = np.array([1, 0, 3, 2, 1, 3]) uniques = _unique(values) assert_array_equal(uniques, expected_uniques) uniques, inverse = _unique(values, return_inverse=True) assert_array_equal(uniques, expected_uniques) assert_array_equal(inverse, expected_inverse) encoded = _encode(values, uniques=uniques) assert_array_equal(encoded, expected_inverse) def test_unique_util_with_all_missing_values(): # test for all types of missing values for object dtype values = np.array([np.nan, "a", "c", "c", None, float("nan"), None], dtype=object) uniques = _unique(values) assert_array_equal(uniques[:-1], ["a", "c", None]) # last value is nan assert np.isnan(uniques[-1]) expected_inverse = [3, 0, 1, 1, 2, 3, 2] _, inverse = _unique(values, return_inverse=True) assert_array_equal(inverse, expected_inverse) def test_check_unknown_with_both_missing_values(): # test for both types of missing values for object dtype values = np.array([np.nan, "a", "c", "c", None, np.nan, None], dtype=object) diff = _check_unknown(values, known_values=np.array(["a", "c"], dtype=object)) assert diff[0] is None assert np.isnan(diff[1]) diff, valid_mask = _check_unknown( values, known_values=np.array(["a", "c"], dtype=object), return_mask=True ) assert diff[0] is None assert np.isnan(diff[1]) assert_array_equal(valid_mask, [False, True, True, True, False, False, False]) @pytest.mark.parametrize( "values, uniques, expected_counts", [ (np.array([1] * 10 + [2] * 4 + [3] * 15), np.array([1, 2, 3]), [10, 4, 15]), ( np.array([1] * 10 + [2] * 4 + [3] * 15), np.array([1, 2, 3, 5]), [10, 4, 15, 0], ), ( np.array([np.nan] * 10 + [2] * 4 + [3] * 15), np.array([2, 3, np.nan]), [4, 15, 10], ), ( np.array(["b"] * 4 + ["a"] * 16 + ["c"] * 20, dtype=object), ["a", "b", "c"], [16, 4, 20], ), ( np.array(["b"] * 4 + ["a"] * 16 + ["c"] * 20, dtype=object), ["c", "b", "a"], [20, 4, 16], ), ( np.array([np.nan] * 4 + ["a"] * 16 + ["c"] * 20, dtype=object), ["c", np.nan, "a"], [20, 4, 16], ), ( np.array(["b"] * 4 + ["a"] * 16 + ["c"] * 20, dtype=object), ["a", "b", "c", "e"], [16, 4, 20, 0], ), ], ) def test_get_counts(values, uniques, expected_counts): counts = _get_counts(values, uniques) assert_array_equal(counts, expected_counts)