Intelegentny_Pszczelarz/.venv/Lib/site-packages/sklearn/tests/test_multioutput.py
2023-06-19 00:49:18 +02:00

765 lines
27 KiB
Python

import pytest
import numpy as np
import scipy.sparse as sp
from joblib import cpu_count
import re
from sklearn.utils._testing import assert_almost_equal
from sklearn.utils._testing import assert_array_equal
from sklearn.utils._testing import assert_array_almost_equal
from sklearn import datasets
from sklearn.base import clone
from sklearn.datasets import make_classification
from sklearn.datasets import load_linnerud
from sklearn.datasets import make_multilabel_classification
from sklearn.datasets import make_regression
from sklearn.ensemble import GradientBoostingRegressor, RandomForestClassifier
from sklearn.exceptions import NotFittedError
from sklearn.linear_model import Lasso
from sklearn.linear_model import LogisticRegression
from sklearn.linear_model import OrthogonalMatchingPursuit
from sklearn.linear_model import Ridge
from sklearn.linear_model import SGDClassifier
from sklearn.linear_model import SGDRegressor
from sklearn.linear_model import LinearRegression
from sklearn.metrics import jaccard_score, mean_squared_error
from sklearn.multiclass import OneVsRestClassifier
from sklearn.multioutput import ClassifierChain, RegressorChain
from sklearn.multioutput import MultiOutputClassifier
from sklearn.multioutput import MultiOutputRegressor
from sklearn.svm import LinearSVC
from sklearn.tree import DecisionTreeClassifier
from sklearn.base import ClassifierMixin
from sklearn.utils import shuffle
from sklearn.model_selection import GridSearchCV, train_test_split
from sklearn.dummy import DummyRegressor, DummyClassifier
from sklearn.pipeline import make_pipeline
from sklearn.impute import SimpleImputer
from sklearn.ensemble import StackingRegressor
def test_multi_target_regression():
X, y = datasets.make_regression(n_targets=3, random_state=0)
X_train, y_train = X[:50], y[:50]
X_test, y_test = X[50:], y[50:]
references = np.zeros_like(y_test)
for n in range(3):
rgr = GradientBoostingRegressor(random_state=0)
rgr.fit(X_train, y_train[:, n])
references[:, n] = rgr.predict(X_test)
rgr = MultiOutputRegressor(GradientBoostingRegressor(random_state=0))
rgr.fit(X_train, y_train)
y_pred = rgr.predict(X_test)
assert_almost_equal(references, y_pred)
def test_multi_target_regression_partial_fit():
X, y = datasets.make_regression(n_targets=3, random_state=0)
X_train, y_train = X[:50], y[:50]
X_test, y_test = X[50:], y[50:]
references = np.zeros_like(y_test)
half_index = 25
for n in range(3):
sgr = SGDRegressor(random_state=0, max_iter=5)
sgr.partial_fit(X_train[:half_index], y_train[:half_index, n])
sgr.partial_fit(X_train[half_index:], y_train[half_index:, n])
references[:, n] = sgr.predict(X_test)
sgr = MultiOutputRegressor(SGDRegressor(random_state=0, max_iter=5))
sgr.partial_fit(X_train[:half_index], y_train[:half_index])
sgr.partial_fit(X_train[half_index:], y_train[half_index:])
y_pred = sgr.predict(X_test)
assert_almost_equal(references, y_pred)
assert not hasattr(MultiOutputRegressor(Lasso), "partial_fit")
def test_multi_target_regression_one_target():
# Test multi target regression raises
X, y = datasets.make_regression(n_targets=1, random_state=0)
rgr = MultiOutputRegressor(GradientBoostingRegressor(random_state=0))
msg = "at least two dimensions"
with pytest.raises(ValueError, match=msg):
rgr.fit(X, y)
def test_multi_target_sparse_regression():
X, y = datasets.make_regression(n_targets=3, random_state=0)
X_train, y_train = X[:50], y[:50]
X_test = X[50:]
for sparse in [
sp.csr_matrix,
sp.csc_matrix,
sp.coo_matrix,
sp.dok_matrix,
sp.lil_matrix,
]:
rgr = MultiOutputRegressor(Lasso(random_state=0))
rgr_sparse = MultiOutputRegressor(Lasso(random_state=0))
rgr.fit(X_train, y_train)
rgr_sparse.fit(sparse(X_train), y_train)
assert_almost_equal(rgr.predict(X_test), rgr_sparse.predict(sparse(X_test)))
def test_multi_target_sample_weights_api():
X = [[1, 2, 3], [4, 5, 6]]
y = [[3.141, 2.718], [2.718, 3.141]]
w = [0.8, 0.6]
rgr = MultiOutputRegressor(OrthogonalMatchingPursuit())
msg = "does not support sample weights"
with pytest.raises(ValueError, match=msg):
rgr.fit(X, y, w)
# no exception should be raised if the base estimator supports weights
rgr = MultiOutputRegressor(GradientBoostingRegressor(random_state=0))
rgr.fit(X, y, w)
def test_multi_target_sample_weight_partial_fit():
# weighted regressor
X = [[1, 2, 3], [4, 5, 6]]
y = [[3.141, 2.718], [2.718, 3.141]]
w = [2.0, 1.0]
rgr_w = MultiOutputRegressor(SGDRegressor(random_state=0, max_iter=5))
rgr_w.partial_fit(X, y, w)
# weighted with different weights
w = [2.0, 2.0]
rgr = MultiOutputRegressor(SGDRegressor(random_state=0, max_iter=5))
rgr.partial_fit(X, y, w)
assert rgr.predict(X)[0][0] != rgr_w.predict(X)[0][0]
def test_multi_target_sample_weights():
# weighted regressor
Xw = [[1, 2, 3], [4, 5, 6]]
yw = [[3.141, 2.718], [2.718, 3.141]]
w = [2.0, 1.0]
rgr_w = MultiOutputRegressor(GradientBoostingRegressor(random_state=0))
rgr_w.fit(Xw, yw, w)
# unweighted, but with repeated samples
X = [[1, 2, 3], [1, 2, 3], [4, 5, 6]]
y = [[3.141, 2.718], [3.141, 2.718], [2.718, 3.141]]
rgr = MultiOutputRegressor(GradientBoostingRegressor(random_state=0))
rgr.fit(X, y)
X_test = [[1.5, 2.5, 3.5], [3.5, 4.5, 5.5]]
assert_almost_equal(rgr.predict(X_test), rgr_w.predict(X_test))
# Import the data
iris = datasets.load_iris()
# create a multiple targets by randomized shuffling and concatenating y.
X = iris.data
y1 = iris.target
y2 = shuffle(y1, random_state=1)
y3 = shuffle(y1, random_state=2)
y = np.column_stack((y1, y2, y3))
n_samples, n_features = X.shape
n_outputs = y.shape[1]
n_classes = len(np.unique(y1))
classes = list(map(np.unique, (y1, y2, y3)))
def test_multi_output_classification_partial_fit_parallelism():
sgd_linear_clf = SGDClassifier(loss="log_loss", random_state=1, max_iter=5)
mor = MultiOutputClassifier(sgd_linear_clf, n_jobs=4)
mor.partial_fit(X, y, classes)
est1 = mor.estimators_[0]
mor.partial_fit(X, y)
est2 = mor.estimators_[0]
if cpu_count() > 1:
# parallelism requires this to be the case for a sane implementation
assert est1 is not est2
# check multioutput has predict_proba
def test_hasattr_multi_output_predict_proba():
# default SGDClassifier has loss='hinge'
# which does not expose a predict_proba method
sgd_linear_clf = SGDClassifier(random_state=1, max_iter=5)
multi_target_linear = MultiOutputClassifier(sgd_linear_clf)
multi_target_linear.fit(X, y)
assert not hasattr(multi_target_linear, "predict_proba")
# case where predict_proba attribute exists
sgd_linear_clf = SGDClassifier(loss="log_loss", random_state=1, max_iter=5)
multi_target_linear = MultiOutputClassifier(sgd_linear_clf)
multi_target_linear.fit(X, y)
assert hasattr(multi_target_linear, "predict_proba")
# check predict_proba passes
def test_multi_output_predict_proba():
sgd_linear_clf = SGDClassifier(random_state=1, max_iter=5, loss="log_loss")
param = {"loss": ("hinge", "log", "modified_huber")}
# inner function for custom scoring
def custom_scorer(estimator, X, y):
if hasattr(estimator, "predict_proba"):
return 1.0
else:
return 0.0
grid_clf = GridSearchCV(
sgd_linear_clf, param_grid=param, scoring=custom_scorer, cv=3
)
multi_target_linear = MultiOutputClassifier(grid_clf)
multi_target_linear.fit(X, y)
multi_target_linear.predict_proba(X)
# SGDClassifier defaults to loss='hinge' which is not a probabilistic
# loss function; therefore it does not expose a predict_proba method
sgd_linear_clf = SGDClassifier(random_state=1, max_iter=5)
multi_target_linear = MultiOutputClassifier(sgd_linear_clf)
multi_target_linear.fit(X, y)
err_msg = "probability estimates are not available for loss='hinge'"
with pytest.raises(AttributeError, match=err_msg):
multi_target_linear.predict_proba(X)
def test_multi_output_classification_partial_fit():
# test if multi_target initializes correctly with base estimator and fit
# assert predictions work as expected for predict
sgd_linear_clf = SGDClassifier(loss="log_loss", random_state=1, max_iter=5)
multi_target_linear = MultiOutputClassifier(sgd_linear_clf)
# train the multi_target_linear and also get the predictions.
half_index = X.shape[0] // 2
multi_target_linear.partial_fit(X[:half_index], y[:half_index], classes=classes)
first_predictions = multi_target_linear.predict(X)
assert (n_samples, n_outputs) == first_predictions.shape
multi_target_linear.partial_fit(X[half_index:], y[half_index:])
second_predictions = multi_target_linear.predict(X)
assert (n_samples, n_outputs) == second_predictions.shape
# train the linear classification with each column and assert that
# predictions are equal after first partial_fit and second partial_fit
for i in range(3):
# create a clone with the same state
sgd_linear_clf = clone(sgd_linear_clf)
sgd_linear_clf.partial_fit(
X[:half_index], y[:half_index, i], classes=classes[i]
)
assert_array_equal(sgd_linear_clf.predict(X), first_predictions[:, i])
sgd_linear_clf.partial_fit(X[half_index:], y[half_index:, i])
assert_array_equal(sgd_linear_clf.predict(X), second_predictions[:, i])
def test_multi_output_classification_partial_fit_no_first_classes_exception():
sgd_linear_clf = SGDClassifier(loss="log_loss", random_state=1, max_iter=5)
multi_target_linear = MultiOutputClassifier(sgd_linear_clf)
msg = "classes must be passed on the first call to partial_fit."
with pytest.raises(ValueError, match=msg):
multi_target_linear.partial_fit(X, y)
def test_multi_output_classification():
# test if multi_target initializes correctly with base estimator and fit
# assert predictions work as expected for predict, prodict_proba and score
forest = RandomForestClassifier(n_estimators=10, random_state=1)
multi_target_forest = MultiOutputClassifier(forest)
# train the multi_target_forest and also get the predictions.
multi_target_forest.fit(X, y)
predictions = multi_target_forest.predict(X)
assert (n_samples, n_outputs) == predictions.shape
predict_proba = multi_target_forest.predict_proba(X)
assert len(predict_proba) == n_outputs
for class_probabilities in predict_proba:
assert (n_samples, n_classes) == class_probabilities.shape
assert_array_equal(np.argmax(np.dstack(predict_proba), axis=1), predictions)
# train the forest with each column and assert that predictions are equal
for i in range(3):
forest_ = clone(forest) # create a clone with the same state
forest_.fit(X, y[:, i])
assert list(forest_.predict(X)) == list(predictions[:, i])
assert_array_equal(list(forest_.predict_proba(X)), list(predict_proba[i]))
def test_multiclass_multioutput_estimator():
# test to check meta of meta estimators
svc = LinearSVC(random_state=0)
multi_class_svc = OneVsRestClassifier(svc)
multi_target_svc = MultiOutputClassifier(multi_class_svc)
multi_target_svc.fit(X, y)
predictions = multi_target_svc.predict(X)
assert (n_samples, n_outputs) == predictions.shape
# train the forest with each column and assert that predictions are equal
for i in range(3):
multi_class_svc_ = clone(multi_class_svc) # create a clone
multi_class_svc_.fit(X, y[:, i])
assert list(multi_class_svc_.predict(X)) == list(predictions[:, i])
def test_multiclass_multioutput_estimator_predict_proba():
seed = 542
# make test deterministic
rng = np.random.RandomState(seed)
# random features
X = rng.normal(size=(5, 5))
# random labels
y1 = np.array(["b", "a", "a", "b", "a"]).reshape(5, 1) # 2 classes
y2 = np.array(["d", "e", "f", "e", "d"]).reshape(5, 1) # 3 classes
Y = np.concatenate([y1, y2], axis=1)
clf = MultiOutputClassifier(
LogisticRegression(solver="liblinear", random_state=seed)
)
clf.fit(X, Y)
y_result = clf.predict_proba(X)
y_actual = [
np.array(
[
[0.23481764, 0.76518236],
[0.67196072, 0.32803928],
[0.54681448, 0.45318552],
[0.34883923, 0.65116077],
[0.73687069, 0.26312931],
]
),
np.array(
[
[0.5171785, 0.23878628, 0.24403522],
[0.22141451, 0.64102704, 0.13755846],
[0.16751315, 0.18256843, 0.64991843],
[0.27357372, 0.55201592, 0.17441036],
[0.65745193, 0.26062899, 0.08191907],
]
),
]
for i in range(len(y_actual)):
assert_almost_equal(y_result[i], y_actual[i])
def test_multi_output_classification_sample_weights():
# weighted classifier
Xw = [[1, 2, 3], [4, 5, 6]]
yw = [[3, 2], [2, 3]]
w = np.asarray([2.0, 1.0])
forest = RandomForestClassifier(n_estimators=10, random_state=1)
clf_w = MultiOutputClassifier(forest)
clf_w.fit(Xw, yw, w)
# unweighted, but with repeated samples
X = [[1, 2, 3], [1, 2, 3], [4, 5, 6]]
y = [[3, 2], [3, 2], [2, 3]]
forest = RandomForestClassifier(n_estimators=10, random_state=1)
clf = MultiOutputClassifier(forest)
clf.fit(X, y)
X_test = [[1.5, 2.5, 3.5], [3.5, 4.5, 5.5]]
assert_almost_equal(clf.predict(X_test), clf_w.predict(X_test))
def test_multi_output_classification_partial_fit_sample_weights():
# weighted classifier
Xw = [[1, 2, 3], [4, 5, 6], [1.5, 2.5, 3.5]]
yw = [[3, 2], [2, 3], [3, 2]]
w = np.asarray([2.0, 1.0, 1.0])
sgd_linear_clf = SGDClassifier(random_state=1, max_iter=20)
clf_w = MultiOutputClassifier(sgd_linear_clf)
clf_w.fit(Xw, yw, w)
# unweighted, but with repeated samples
X = [[1, 2, 3], [1, 2, 3], [4, 5, 6], [1.5, 2.5, 3.5]]
y = [[3, 2], [3, 2], [2, 3], [3, 2]]
sgd_linear_clf = SGDClassifier(random_state=1, max_iter=20)
clf = MultiOutputClassifier(sgd_linear_clf)
clf.fit(X, y)
X_test = [[1.5, 2.5, 3.5]]
assert_array_almost_equal(clf.predict(X_test), clf_w.predict(X_test))
def test_multi_output_exceptions():
# NotFittedError when fit is not done but score, predict and
# and predict_proba are called
moc = MultiOutputClassifier(LinearSVC(random_state=0))
with pytest.raises(NotFittedError):
moc.score(X, y)
# ValueError when number of outputs is different
# for fit and score
y_new = np.column_stack((y1, y2))
moc.fit(X, y)
with pytest.raises(ValueError):
moc.score(X, y_new)
# ValueError when y is continuous
msg = "Unknown label type"
with pytest.raises(ValueError, match=msg):
moc.fit(X, X[:, 1])
@pytest.mark.parametrize("response_method", ["predict_proba", "predict"])
def test_multi_output_not_fitted_error(response_method):
"""Check that we raise the proper error when the estimator is not fitted"""
moc = MultiOutputClassifier(LogisticRegression())
with pytest.raises(NotFittedError):
getattr(moc, response_method)(X)
def test_multi_output_delegate_predict_proba():
"""Check the behavior for the delegation of predict_proba to the underlying
estimator"""
# A base estimator with `predict_proba`should expose the method even before fit
moc = MultiOutputClassifier(LogisticRegression())
assert hasattr(moc, "predict_proba")
moc.fit(X, y)
assert hasattr(moc, "predict_proba")
# A base estimator without `predict_proba` should raise an AttributeError
moc = MultiOutputClassifier(LinearSVC())
assert not hasattr(moc, "predict_proba")
msg = "'LinearSVC' object has no attribute 'predict_proba'"
with pytest.raises(AttributeError, match=msg):
moc.predict_proba(X)
moc.fit(X, y)
assert not hasattr(moc, "predict_proba")
with pytest.raises(AttributeError, match=msg):
moc.predict_proba(X)
def generate_multilabel_dataset_with_correlations():
# Generate a multilabel data set from a multiclass dataset as a way of
# by representing the integer number of the original class using a binary
# encoding.
X, y = make_classification(
n_samples=1000, n_features=100, n_classes=16, n_informative=10, random_state=0
)
Y_multi = np.array([[int(yyy) for yyy in format(yy, "#06b")[2:]] for yy in y])
return X, Y_multi
def test_classifier_chain_fit_and_predict_with_linear_svc():
# Fit classifier chain and verify predict performance using LinearSVC
X, Y = generate_multilabel_dataset_with_correlations()
classifier_chain = ClassifierChain(LinearSVC())
classifier_chain.fit(X, Y)
Y_pred = classifier_chain.predict(X)
assert Y_pred.shape == Y.shape
Y_decision = classifier_chain.decision_function(X)
Y_binary = Y_decision >= 0
assert_array_equal(Y_binary, Y_pred)
assert not hasattr(classifier_chain, "predict_proba")
def test_classifier_chain_fit_and_predict_with_sparse_data():
# Fit classifier chain with sparse data
X, Y = generate_multilabel_dataset_with_correlations()
X_sparse = sp.csr_matrix(X)
classifier_chain = ClassifierChain(LogisticRegression())
classifier_chain.fit(X_sparse, Y)
Y_pred_sparse = classifier_chain.predict(X_sparse)
classifier_chain = ClassifierChain(LogisticRegression())
classifier_chain.fit(X, Y)
Y_pred_dense = classifier_chain.predict(X)
assert_array_equal(Y_pred_sparse, Y_pred_dense)
def test_classifier_chain_vs_independent_models():
# Verify that an ensemble of classifier chains (each of length
# N) can achieve a higher Jaccard similarity score than N independent
# models
X, Y = generate_multilabel_dataset_with_correlations()
X_train = X[:600, :]
X_test = X[600:, :]
Y_train = Y[:600, :]
Y_test = Y[600:, :]
ovr = OneVsRestClassifier(LogisticRegression())
ovr.fit(X_train, Y_train)
Y_pred_ovr = ovr.predict(X_test)
chain = ClassifierChain(LogisticRegression())
chain.fit(X_train, Y_train)
Y_pred_chain = chain.predict(X_test)
assert jaccard_score(Y_test, Y_pred_chain, average="samples") > jaccard_score(
Y_test, Y_pred_ovr, average="samples"
)
def test_base_chain_fit_and_predict():
# Fit base chain and verify predict performance
X, Y = generate_multilabel_dataset_with_correlations()
chains = [RegressorChain(Ridge()), ClassifierChain(LogisticRegression())]
for chain in chains:
chain.fit(X, Y)
Y_pred = chain.predict(X)
assert Y_pred.shape == Y.shape
assert [c.coef_.size for c in chain.estimators_] == list(
range(X.shape[1], X.shape[1] + Y.shape[1])
)
Y_prob = chains[1].predict_proba(X)
Y_binary = Y_prob >= 0.5
assert_array_equal(Y_binary, Y_pred)
assert isinstance(chains[1], ClassifierMixin)
def test_base_chain_fit_and_predict_with_sparse_data_and_cv():
# Fit base chain with sparse data cross_val_predict
X, Y = generate_multilabel_dataset_with_correlations()
X_sparse = sp.csr_matrix(X)
base_chains = [
ClassifierChain(LogisticRegression(), cv=3),
RegressorChain(Ridge(), cv=3),
]
for chain in base_chains:
chain.fit(X_sparse, Y)
Y_pred = chain.predict(X_sparse)
assert Y_pred.shape == Y.shape
def test_base_chain_random_order():
# Fit base chain with random order
X, Y = generate_multilabel_dataset_with_correlations()
for chain in [ClassifierChain(LogisticRegression()), RegressorChain(Ridge())]:
chain_random = clone(chain).set_params(order="random", random_state=42)
chain_random.fit(X, Y)
chain_fixed = clone(chain).set_params(order=chain_random.order_)
chain_fixed.fit(X, Y)
assert_array_equal(chain_fixed.order_, chain_random.order_)
assert list(chain_random.order) != list(range(4))
assert len(chain_random.order_) == 4
assert len(set(chain_random.order_)) == 4
# Randomly ordered chain should behave identically to a fixed order
# chain with the same order.
for est1, est2 in zip(chain_random.estimators_, chain_fixed.estimators_):
assert_array_almost_equal(est1.coef_, est2.coef_)
def test_base_chain_crossval_fit_and_predict():
# Fit chain with cross_val_predict and verify predict
# performance
X, Y = generate_multilabel_dataset_with_correlations()
for chain in [ClassifierChain(LogisticRegression()), RegressorChain(Ridge())]:
chain.fit(X, Y)
chain_cv = clone(chain).set_params(cv=3)
chain_cv.fit(X, Y)
Y_pred_cv = chain_cv.predict(X)
Y_pred = chain.predict(X)
assert Y_pred_cv.shape == Y_pred.shape
assert not np.all(Y_pred == Y_pred_cv)
if isinstance(chain, ClassifierChain):
assert jaccard_score(Y, Y_pred_cv, average="samples") > 0.4
else:
assert mean_squared_error(Y, Y_pred_cv) < 0.25
@pytest.mark.parametrize(
"estimator",
[
RandomForestClassifier(n_estimators=2),
MultiOutputClassifier(RandomForestClassifier(n_estimators=2)),
ClassifierChain(RandomForestClassifier(n_estimators=2)),
],
)
def test_multi_output_classes_(estimator):
# Tests classes_ attribute of multioutput classifiers
# RandomForestClassifier supports multioutput out-of-the-box
estimator.fit(X, y)
assert isinstance(estimator.classes_, list)
assert len(estimator.classes_) == n_outputs
for estimator_classes, expected_classes in zip(classes, estimator.classes_):
assert_array_equal(estimator_classes, expected_classes)
class DummyRegressorWithFitParams(DummyRegressor):
def fit(self, X, y, sample_weight=None, **fit_params):
self._fit_params = fit_params
return super().fit(X, y, sample_weight)
class DummyClassifierWithFitParams(DummyClassifier):
def fit(self, X, y, sample_weight=None, **fit_params):
self._fit_params = fit_params
return super().fit(X, y, sample_weight)
@pytest.mark.filterwarnings("ignore:`n_features_in_` is deprecated")
@pytest.mark.parametrize(
"estimator, dataset",
[
(
MultiOutputClassifier(DummyClassifierWithFitParams(strategy="prior")),
datasets.make_multilabel_classification(),
),
(
MultiOutputRegressor(DummyRegressorWithFitParams()),
datasets.make_regression(n_targets=3, random_state=0),
),
],
)
def test_multioutput_estimator_with_fit_params(estimator, dataset):
X, y = dataset
some_param = np.zeros_like(X)
estimator.fit(X, y, some_param=some_param)
for dummy_estimator in estimator.estimators_:
assert "some_param" in dummy_estimator._fit_params
def test_regressor_chain_w_fit_params():
# Make sure fit_params are properly propagated to the sub-estimators
rng = np.random.RandomState(0)
X, y = datasets.make_regression(n_targets=3, random_state=0)
weight = rng.rand(y.shape[0])
class MySGD(SGDRegressor):
def fit(self, X, y, **fit_params):
self.sample_weight_ = fit_params["sample_weight"]
super().fit(X, y, **fit_params)
model = RegressorChain(MySGD())
# Fitting with params
fit_param = {"sample_weight": weight}
model.fit(X, y, **fit_param)
for est in model.estimators_:
assert est.sample_weight_ is weight
@pytest.mark.parametrize(
"MultiOutputEstimator, Estimator",
[(MultiOutputClassifier, LogisticRegression), (MultiOutputRegressor, Ridge)],
)
# FIXME: we should move this test in `estimator_checks` once we are able
# to construct meta-estimator instances
def test_support_missing_values(MultiOutputEstimator, Estimator):
# smoke test to check that pipeline MultioutputEstimators are letting
# the validation of missing values to
# the underlying pipeline, regressor or classifier
rng = np.random.RandomState(42)
X, y = rng.randn(50, 2), rng.binomial(1, 0.5, (50, 3))
mask = rng.choice([1, 0], X.shape, p=[0.01, 0.99]).astype(bool)
X[mask] = np.nan
pipe = make_pipeline(SimpleImputer(), Estimator())
MultiOutputEstimator(pipe).fit(X, y).score(X, y)
@pytest.mark.parametrize("order_type", [list, np.array, tuple])
def test_classifier_chain_tuple_order(order_type):
X = [[1, 2, 3], [4, 5, 6], [1.5, 2.5, 3.5]]
y = [[3, 2], [2, 3], [3, 2]]
order = order_type([1, 0])
chain = ClassifierChain(RandomForestClassifier(), order=order)
chain.fit(X, y)
X_test = [[1.5, 2.5, 3.5]]
y_test = [[3, 2]]
assert_array_almost_equal(chain.predict(X_test), y_test)
def test_classifier_chain_tuple_invalid_order():
X = [[1, 2, 3], [4, 5, 6], [1.5, 2.5, 3.5]]
y = [[3, 2], [2, 3], [3, 2]]
order = tuple([1, 2])
chain = ClassifierChain(RandomForestClassifier(), order=order)
with pytest.raises(ValueError, match="invalid order"):
chain.fit(X, y)
def test_classifier_chain_verbose(capsys):
X, y = make_multilabel_classification(
n_samples=100, n_features=5, n_classes=3, n_labels=3, random_state=0
)
X_train, X_test, y_train, y_test = train_test_split(X, y, random_state=0)
pattern = (
r"\[Chain\].*\(1 of 3\) Processing order 0, total=.*\n"
r"\[Chain\].*\(2 of 3\) Processing order 1, total=.*\n"
r"\[Chain\].*\(3 of 3\) Processing order 2, total=.*\n$"
)
classifier = ClassifierChain(
DecisionTreeClassifier(),
order=[0, 1, 2],
random_state=0,
verbose=True,
)
classifier.fit(X_train, y_train)
assert re.match(pattern, capsys.readouterr()[0])
def test_regressor_chain_verbose(capsys):
X, y = make_regression(n_samples=125, n_targets=3, random_state=0)
X_train, X_test, y_train, y_test = train_test_split(X, y, random_state=0)
pattern = (
r"\[Chain\].*\(1 of 3\) Processing order 1, total=.*\n"
r"\[Chain\].*\(2 of 3\) Processing order 0, total=.*\n"
r"\[Chain\].*\(3 of 3\) Processing order 2, total=.*\n$"
)
regressor = RegressorChain(
LinearRegression(),
order=[1, 0, 2],
random_state=0,
verbose=True,
)
regressor.fit(X_train, y_train)
assert re.match(pattern, capsys.readouterr()[0])
def test_multioutputregressor_ducktypes_fitted_estimator():
"""Test that MultiOutputRegressor checks the fitted estimator for
predict. Non-regression test for #16549."""
X, y = load_linnerud(return_X_y=True)
stacker = StackingRegressor(
estimators=[("sgd", SGDRegressor(random_state=1))],
final_estimator=Ridge(),
cv=2,
)
reg = MultiOutputRegressor(estimator=stacker).fit(X, y)
# Does not raise
reg.predict(X)