{{py: implementation_specific_values = [ # Values are the following ones: # # name_suffix, INPUT_DTYPE_t, INPUT_DTYPE ('64', 'float64_t', 'np.float64'), ('32', 'float32_t', 'np.float32') ] }} from libc.math cimport sqrt, exp from ..utils._typedefs cimport float64_t, float32_t, int32_t, intp_t cdef class DistanceMetric: pass {{for name_suffix, INPUT_DTYPE_t, INPUT_DTYPE in implementation_specific_values}} ###################################################################### # Inline distance functions # # We use these for the default (euclidean) case so that they can be # inlined. This leads to faster computation for the most common case cdef inline float64_t euclidean_dist{{name_suffix}}( const {{INPUT_DTYPE_t}}* x1, const {{INPUT_DTYPE_t}}* x2, intp_t size, ) except -1 nogil: cdef float64_t tmp, d=0 cdef intp_t j for j in range(size): tmp = (x1[j] - x2[j]) d += tmp * tmp return sqrt(d) cdef inline float64_t euclidean_rdist{{name_suffix}}( const {{INPUT_DTYPE_t}}* x1, const {{INPUT_DTYPE_t}}* x2, intp_t size, ) except -1 nogil: cdef float64_t tmp, d=0 cdef intp_t j for j in range(size): tmp = (x1[j] - x2[j]) d += tmp * tmp return d cdef inline float64_t euclidean_dist_to_rdist{{name_suffix}}(const {{INPUT_DTYPE_t}} dist) except -1 nogil: return dist * dist cdef inline float64_t euclidean_rdist_to_dist{{name_suffix}}(const {{INPUT_DTYPE_t}} dist) except -1 nogil: return sqrt(dist) ###################################################################### # DistanceMetric{{name_suffix}} base class cdef class DistanceMetric{{name_suffix}}(DistanceMetric): # The following attributes are required for a few of the subclasses. # we must define them here so that cython's limited polymorphism will work. # Because we don't expect to instantiate a lot of these objects, the # extra memory overhead of this setup should not be an issue. cdef float64_t p cdef const float64_t[::1] vec cdef const float64_t[:, ::1] mat cdef intp_t size cdef object func cdef object kwargs cdef {{INPUT_DTYPE_t}} dist( self, const {{INPUT_DTYPE_t}}* x1, const {{INPUT_DTYPE_t}}* x2, intp_t size, ) except -1 nogil cdef {{INPUT_DTYPE_t}} rdist( self, const {{INPUT_DTYPE_t}}* x1, const {{INPUT_DTYPE_t}}* x2, intp_t size, ) except -1 nogil cdef {{INPUT_DTYPE_t}} dist_csr( self, const {{INPUT_DTYPE_t}}* x1_data, const int32_t* x1_indices, const {{INPUT_DTYPE_t}}* x2_data, const int32_t* x2_indices, const int32_t x1_start, const int32_t x1_end, const int32_t x2_start, const int32_t x2_end, const intp_t size, ) except -1 nogil cdef {{INPUT_DTYPE_t}} rdist_csr( self, const {{INPUT_DTYPE_t}}* x1_data, const int32_t* x1_indices, const {{INPUT_DTYPE_t}}* x2_data, const int32_t* x2_indices, const int32_t x1_start, const int32_t x1_end, const int32_t x2_start, const int32_t x2_end, const intp_t size, ) except -1 nogil cdef int pdist( self, const {{INPUT_DTYPE_t}}[:, ::1] X, {{INPUT_DTYPE_t}}[:, ::1] D, ) except -1 cdef int cdist( self, const {{INPUT_DTYPE_t}}[:, ::1] X, const {{INPUT_DTYPE_t}}[:, ::1] Y, {{INPUT_DTYPE_t}}[:, ::1] D, ) except -1 cdef int pdist_csr( self, const {{INPUT_DTYPE_t}}* x1_data, const int32_t[::1] x1_indices, const int32_t[::1] x1_indptr, const intp_t size, {{INPUT_DTYPE_t}}[:, ::1] D, ) except -1 nogil cdef int cdist_csr( self, const {{INPUT_DTYPE_t}}* x1_data, const int32_t[::1] x1_indices, const int32_t[::1] x1_indptr, const {{INPUT_DTYPE_t}}* x2_data, const int32_t[::1] x2_indices, const int32_t[::1] x2_indptr, const intp_t size, {{INPUT_DTYPE_t}}[:, ::1] D, ) except -1 nogil cdef {{INPUT_DTYPE_t}} _rdist_to_dist(self, {{INPUT_DTYPE_t}} rdist) except -1 nogil cdef {{INPUT_DTYPE_t}} _dist_to_rdist(self, {{INPUT_DTYPE_t}} dist) except -1 nogil {{endfor}}