ium_478839/ml_pytorch_mlflow.py

import torch
import jovian
import torchvision
import matplotlib
import torch.nn as nn
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt
import seaborn as sns
import torch.nn.functional as F
from torchvision.datasets.utils import download_url
from torch.utils.data import DataLoader, TensorDataset, random_split
import random
import os
import sys
import mlflow
from mlflow.models import infer_signature
from urllib.parse import urlparse
from sklearn.metrics import mean_squared_error
from sklearn.metrics import mean_absolute_error

mlflow.set_experiment("s478839")

def my_config():
    epochs = 1000
    
#load data
dataframe = pd.read_csv("understat.csv")

#choose columns
input_cols=list(dataframe.columns)[4:11]
output_cols = ['position']
input_cols, output_cols

def dataframe_to_arrays(dataframe):
    dataframe_loc = dataframe.copy(deep=True)
    inputs_array = dataframe_loc[input_cols].to_numpy()
    targets_array = dataframe_loc[output_cols].to_numpy()
    return inputs_array, targets_array

inputs_array, targets_array = dataframe_to_arrays(dataframe)

inputs = torch.from_numpy(inputs_array).type(torch.float)
targets = torch.from_numpy(targets_array).type(torch.float)

dataset = TensorDataset(inputs, targets)

train_ds, val_ds = random_split(dataset, [548, 136])
batch_size=50
train_loader = DataLoader(train_ds, batch_size, shuffle=True)
val_loader = DataLoader(val_ds, batch_size)

class Model_xPosition(nn.Module):
    def __init__(self):
        super().__init__()
        self.linear = nn.Linear(input_size,output_size) 
        
    def forward(self, xb): 
        out = self.linear(xb)
        return out
    
    def training_step(self, batch):
        inputs, targets = batch 
        # Generate predictions
        out = self(inputs)          
        # Calcuate loss
        loss = F.l1_loss(out,targets) 
        return loss
    
    def validation_step(self, batch):
        inputs, targets = batch
        out = self(inputs)
        loss = F.l1_loss(out,targets)   
        return {'val_loss': loss.detach()}
        
    def validation_epoch_end(self, outputs):
        batch_losses = [x['val_loss'] for x in outputs]
        epoch_loss = torch.stack(batch_losses).mean() 
        return {'val_loss': epoch_loss.item()}
    
    def epoch_end(self, epoch, result, num_epochs):
        if (epoch+1) % 100 == 0 or epoch == num_epochs-1:
            print("Epoch {} loss: {:.4f}".format(epoch+1, result['val_loss']))
            
            
def evaluate(model, val_loader):
    outputs = [model.validation_step(batch) for batch in val_loader]
    return model.validation_epoch_end(outputs)

def fit(epochs, lr, model, train_loader, val_loader, opt_func=torch.optim.SGD):
    history = []
    optimizer = opt_func(model.parameters(), lr)
    for epoch in range(epochs):
        for batch in train_loader:
            loss = model.training_step(batch)
            loss.backward()
            optimizer.step()
            optimizer.zero_grad()
        result = evaluate(model, val_loader)
        model.epoch_end(epoch, result, epochs)
        history.append(result)
    return history

def predict_single(input, target, model):
    inputs = input.unsqueeze(0)
    predictions = model(inputs)
    prediction = predictions[0].detach()

    return "Target: "+str(target)+"          Predicted: "+str(prediction)+"\n"

def prediction(input, model):
    inputs = input.unsqueeze(0)
    predictions = model(inputs)
    predicted = predictions[0].detach()
    return predicted

input_size = len(input_cols)
output_size = len(output_cols)
model=Model_xPosition()
lr = 1e-5

# epochs = int(sys.argv[1]) if len(sys.argv) > 1 else 20 
epochs = 1000

def my_main(epochs):  
    mlflow.log_param("epochs", epochs)
    learning_proccess = fit(epochs, lr, model, train_loader, val_loader) 
    for i in random.sample(range(0, len(val_ds)), 10):
        input_, target = val_ds[i]
        print(predict_single(input_, target, model),end="")
    
    expected = []
    predicted = []
    inputss = []
    for i in range(0, len(val_ds), 1):
        input_, target = val_ds[i]
        expected.append(float(target))
        predicted.append(float(prediction(input_, model)))
        inputss.append(input_)
    
    inputss = pd.DataFrame(inputss, dtype=np.float64)
    inputss = inputss.to_numpy()

    MSE = mean_squared_error(expected, predicted)
    MAE = mean_absolute_error(expected, predicted)

    mlflow.log_metric("MSE", MSE)
    mlflow.log_metric("MAE", MAE)


    with open("result.txt", "w+") as file:
        for i in range(0, len(val_ds), 1):
            input_, target = val_ds[i]
            file.write(str(predict_single(input_, target, model)))

    print(inputss)

    input_example = inputss[0]
    signature = infer_signature(inputss, expected)
    tracking_url_type_store = urlparse(mlflow.get_tracking_uri()).scheme

    if tracking_url_type_store != "file":
        mlflow.pytorch.log_model(model, "model", registered_model_name="s478839", signature=siganture,
                                 input_example=input_example)
    else:
        mlflow.pytorch.log_model(model, "model", signature=siganture, input_example=input_example)
        mlflow.pytorch.save_model(model, "my_model", signature=siganture, input_example=input_example)


with mlflow.start_run() as run:
    my_main(epochs)