Merge pull request 'master' (#16) from tzietkiewicz/aitech-ium:master into master
Reviewed-on: AITech/aitech-ium#16
This commit is contained in:
commit
490a89108c
266
IUM_10.DVC.ipynb
266
IUM_10.DVC.ipynb
@ -303,7 +303,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": 4,
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"execution_count": 2,
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"id": "1e522a93",
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"metadata": {
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"slideshow": {
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@ -864,26 +864,10 @@
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},
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{
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"cell_type": "code",
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"execution_count": 29,
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"id": "8ecf3091",
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"metadata": {
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"slideshow": {
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"slide_type": "slide"
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}
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},
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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" 0% Uploading| |0/1 [00:00<?, ?file/s]\n",
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"!\u001b[A\n",
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" 0%| |data/Iris.csv 0.00/5.11k [00:00<?, ?it/s]\u001b[A\n",
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"1 file pushed \u001b[A\n",
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"\u001b[0m"
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]
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}
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],
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"execution_count": null,
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"id": "c7f24f75",
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"metadata": {},
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"outputs": [],
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"source": [
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"!dvc push"
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]
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@ -1196,13 +1180,7 @@
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" 52%|█████▏ |get-started/data.xml 18.6M/36.1M [00:13<00:03, 4.84MB/s]\u001b[A\n",
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" 53%|█████▎ |get-started/data.xml 19.2M/36.1M [00:13<00:03, 5.05MB/s]\u001b[A\n",
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" 55%|█████▍ |get-started/data.xml 19.8M/36.1M [00:13<00:03, 5.16MB/s]\u001b[A\n",
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" 57%|█████▋ |get-started/data.xml 20.4M/36.1M [00:13<00:03, 5.35MB/s]\u001b[A\n"
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]
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},
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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" 57%|█████▋ |get-started/data.xml 20.4M/36.1M [00:13<00:03, 5.35MB/s]\u001b[A\n",
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" 58%|█████▊ |get-started/data.xml 21.1M/36.1M [00:13<00:02, 5.49MB/s]\u001b[A\n",
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" 60%|██████ |get-started/data.xml 21.8M/36.1M [00:13<00:02, 5.66MB/s]\u001b[A\n",
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" 62%|██████▏ |get-started/data.xml 22.4M/36.1M [00:13<00:02, 5.83MB/s]\u001b[A\n",
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@ -1360,6 +1338,238 @@
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"4. Stwórz/zdefiniuj i dodaj do repozytorium plik `dvc.yaml` opisujący kroki wykonywane w Twoim projekcie. Wydziel przynajmniej 2 kroki (np. przygotowanie danych/trenowanie) powiązane ze sobą za pomocą zależności (skorzystaj z materiałów \"Getting started\", link powyżej) [6pkt]\n",
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"5. Stwórz projekt na Jenkinsie (`s1233456-dvc`), w którym sklonujesz repozytorium, ściągniesz pliki dvc (za pomocą `dvc pull`) i uruchomisz pipeline (za pomocą `dvc reproduce`) [6pkt]"
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]
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},
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{
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"cell_type": "markdown",
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"id": "2f5a8590",
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"metadata": {},
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"source": [
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"## SSH remote"
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]
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},
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{
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"cell_type": "markdown",
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"id": "7ad575c8",
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"metadata": {},
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"source": [
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"### Lokalnie:"
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]
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},
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{
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"cell_type": "markdown",
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"id": "82a61107",
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"metadata": {},
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"source": [
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"Będziemy potrzebować zależności :\n",
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" \n",
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" `conda install dvc-ssh` \n",
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"\n",
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"albo\n",
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"\n",
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"`pip install dvc[ssh] paramiko`"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 15,
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"id": "c48c5b8e",
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"metadata": {},
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"Collecting package metadata (current_repodata.json): done\n",
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"Solving environment: done\n",
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"\n",
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"## Package Plan ##\n",
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"\n",
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" environment location: /home/tomek/miniconda3\n",
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"\n",
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" added / updated specs:\n",
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" - dvc-ssh\n",
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"\n",
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"\n",
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"The following packages will be downloaded:\n",
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"\n",
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" package | build\n",
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" ---------------------------|-----------------\n",
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" bcrypt-3.2.0 | py39h3811e60_1 44 KB conda-forge\n",
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" ca-certificates-2021.5.30 | ha878542_0 136 KB conda-forge\n",
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" certifi-2021.5.30 | py39hf3d152e_0 141 KB conda-forge\n",
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" dvc-2.3.0 | py39hf3d152e_0 542 KB conda-forge\n",
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" dvc-ssh-2.3.0 | py39hf3d152e_0 9 KB conda-forge\n",
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" fsspec-2021.5.0 | pyhd8ed1ab_0 77 KB conda-forge\n",
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" invoke-1.5.0 | pyhd3deb0d_0 137 KB conda-forge\n",
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" paramiko-2.7.2 | pyh9f0ad1d_0 135 KB conda-forge\n",
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" pynacl-1.4.0 | py39h3811e60_2 1.3 MB conda-forge\n",
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" ------------------------------------------------------------\n",
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" Total: 2.5 MB\n",
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"\n",
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"The following NEW packages will be INSTALLED:\n",
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"\n",
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" bcrypt conda-forge/linux-64::bcrypt-3.2.0-py39h3811e60_1\n",
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" dvc-ssh conda-forge/linux-64::dvc-ssh-2.3.0-py39hf3d152e_0\n",
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" invoke conda-forge/noarch::invoke-1.5.0-pyhd3deb0d_0\n",
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" paramiko conda-forge/noarch::paramiko-2.7.2-pyh9f0ad1d_0\n",
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" pynacl conda-forge/linux-64::pynacl-1.4.0-py39h3811e60_2\n",
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"\n",
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"The following packages will be UPDATED:\n",
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"\n",
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" ca-certificates 2020.12.5-ha878542_0 --> 2021.5.30-ha878542_0\n",
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" certifi 2020.12.5-py39hf3d152e_1 --> 2021.5.30-py39hf3d152e_0\n",
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" dvc 2.1.0-py39hf3d152e_0 --> 2.3.0-py39hf3d152e_0\n",
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" fsspec 0.9.0-pyhd8ed1ab_2 --> 2021.5.0-pyhd8ed1ab_0\n",
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"\n",
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"\n",
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"\n",
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"Downloading and Extracting Packages\n",
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"certifi-2021.5.30 | 141 KB | ##################################### | 100% \n",
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"fsspec-2021.5.0 | 77 KB | ##################################### | 100% \n",
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"dvc-2.3.0 | 542 KB | ##################################### | 100% \n",
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"invoke-1.5.0 | 137 KB | ##################################### | 100% \n",
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"paramiko-2.7.2 | 135 KB | ##################################### | 100% \n",
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"bcrypt-3.2.0 | 44 KB | ##################################### | 100% \n",
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"pynacl-1.4.0 | 1.3 MB | ##################################### | 100% \n",
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"dvc-ssh-2.3.0 | 9 KB | ##################################### | 100% \n",
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"ca-certificates-2021 | 136 KB | ##################################### | 100% \n",
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"Preparing transaction: done\n",
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"Verifying transaction: done\n",
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"Executing transaction: done\n",
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"\n",
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"Note: you may need to restart the kernel to use updated packages.\n"
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]
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}
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],
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"source": [
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"conda install -c conda-forge dvc-ssh"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 27,
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"id": "e9a04876",
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"metadata": {},
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"Setting 'ium_ssh_remote' as a default remote.\n",
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"\u001b[0m"
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]
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}
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],
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"source": [
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"!dvc remote add -f -d ium_ssh_remote ssh://ium-sftp@tzietkiewicz.vm.wmi.amu.edu.pl/ium-sftp"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 28,
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"id": "e3f27bbb",
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"metadata": {},
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"my_local_remote\t/dvcstore\n",
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"ium_ssh_remote\tssh://ium-sftp@tzietkiewicz.vm.wmi.amu.edu.pl/ium-sftp\n",
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"\u001b[0m"
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]
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}
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],
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"source": [
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"!dvc remote list"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 32,
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"id": "5b2fa175",
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"metadata": {},
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"\u001b[0m"
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]
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}
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],
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"source": [
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"!dvc remote modify --local ium_ssh_remote password [hasło takie jak do serwera MLflow (patrz MSTeams)]"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 30,
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"id": "ea6e16fa",
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"metadata": {
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"slideshow": {
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"slide_type": "slide"
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}
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},
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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" 0% Uploading| |0/1 [00:00<?, ?file/s]\n",
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"!\u001b[A\n",
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" 0%| |data/Iris.csv 0.00/4.95k [00:00<?, ?B/s]\u001b[A\n",
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"1 file pushed \u001b[A\n",
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"\u001b[0m"
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]
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}
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],
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"source": [
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"!dvc push"
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]
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},
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{
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"cell_type": "markdown",
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"id": "1468c44c",
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"metadata": {},
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"source": [
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"### Jenkins\n",
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"\n",
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"W Jenkins można użyć mechanizmu \"Credentials\", żeby w bezpieczny sposób przekazać hasło albo klucz prywatny.\n",
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"\n",
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"Takie dane dla użytkownika ium-sftp zostały stworzone na Jenkinsie:\n",
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"\n",
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" - typu ssh key: https://tzietkiewicz.vm.wmi.amu.edu.pl:8080/credentials/store/system/domain/_/credential/48ac7004-216e-4260-abba-1fe5db753e18/\n",
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" - typu \"secret text\" - zawierający hasło użytkownika ium-shftp: https://tzietkiewicz.vm.wmi.amu.edu.pl:8080/credentials/store/system/domain/_/credential/ium-sftp-password/\n",
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"\n",
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"Opis używania \"Credentials\" w Jenkinsfile: https://www.jenkins.io/doc/book/pipeline/jenkinsfile/#for-other-credential-types\n",
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"\n",
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"Klucza ssh można użyć tak: \n",
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"\n",
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"```Jenkinsfile\n",
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"withCredentials(\n",
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" [sshUserPrivateKey(credentialsId: '48ac7004-216e-4260-abba-1fe5db753e18', keyFileVariable: 'IUM_SFTP_KEY', passphraseVariable: '', usernameVariable: '')]) {\n",
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" sh \"dvc init -f\"\n",
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" sh \"dvc remote add -d ium_ssh_remote ssh://ium-sftp@tzietkiewicz.vm.wmi.amu.edu.pl/ium-sftp\"\n",
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" sh \"dvc remote modify --local ium_ssh_remote keyfile $IUM_SFTP_KEY\"\n",
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" sh \"dvc pull\"}\n",
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"```\n",
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"\n",
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"Secret text tak:\n",
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"\n",
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"```Jenkinsfile\n",
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" withCredentials([string(credentialsId: 'ium-sftp-password', variable: 'IUM_SFTP_PASS')]) {\n",
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" sh \"dvc init -f\"\n",
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" sh \"dvc remote add -d ium_ssh_remote ssh://ium-sftp@tzietkiewicz.vm.wmi.amu.edu.pl/ium-sftp\"\n",
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" sh \"dvc remote modify --local ium_ssh_remote password $IUM_SFTP_KEY\"\n",
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" sh \"dvc pull\"\n",
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" }\n",
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"```\n",
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"\n",
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"Przykład kongiguracji: \n",
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" - https://tzietkiewicz.vm.wmi.amu.edu.pl:8080/job/docker-test-mount/ \n",
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" - https://git.wmi.amu.edu.pl/tzietkiewicz/ium-helloworld"
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]
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}
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],
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"metadata": {
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@ -13,7 +13,7 @@
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"id": "69587a1e",
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"metadata": {},
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"source": [
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"## Zadanie\n",
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"## Zadanie [30pkt]\n",
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"\n",
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"1. Znajdź minimum 6, interesujących dla Ciebie, ogłoszeń o pracę\n",
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" - na razie nie zważaj na wymagania\n",
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