diff --git a/IUM_10.DVC.ipynb b/IUM_10.DVC.ipynb
index 2aaf6e6..ad96fe5 100644
--- a/IUM_10.DVC.ipynb
+++ b/IUM_10.DVC.ipynb
@@ -13,7 +13,7 @@
"\n",
"
Inżynieria uczenia maszynowego
\n",
" 10. DVC [laboratoria]
\n",
- " Tomasz Ziętkiewicz (2021)
\n",
+ " Tomasz Ziętkiewicz (2022)
\n",
"\n",
"\n",
""
@@ -47,7 +47,7 @@
"- Umożliwia:\n",
" - wersjonowanie danych i modeli. \"Git dla danych i modeli\"\n",
" - budowanie potoków (\"pipeline\") definiujących jak budować/trenować/ewaluować modele. \"Makefile dla uczenia maszynowego\"\n",
- " - śledzeniem, porównywanie metryk i parametrów\n",
+ " - śledzenie, porównywanie metryk i parametrów\n",
"- ściśle zintegowany z gitem\n",
"- działa niezależnie od używanego języka/bibliotek i systemu operacyjnego\n",
"- 5-minutowe wprowadzenie: https://www.youtube.com/watch?v=UbL7VUpv1Bs&t=197s"
@@ -70,7 +70,7 @@
},
{
"cell_type": "code",
- "execution_count": 10,
+ "execution_count": 7,
"id": "054c7a11",
"metadata": {
"slideshow": {
@@ -82,215 +82,427 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "Collecting package metadata (current_repodata.json): done\n",
- "Solving environment: failed with initial frozen solve. Retrying with flexible solve.\n",
- "Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.\n",
- "Collecting package metadata (repodata.json): done\n",
- "Solving environment: done\n",
- "\n",
- "## Package Plan ##\n",
- "\n",
- " environment location: /home/tomek/miniconda3\n",
- "\n",
- " added / updated specs:\n",
- " - dvc\n",
- "\n",
- "\n",
- "The following packages will be downloaded:\n",
- "\n",
- " package | build\n",
- " ---------------------------|-----------------\n",
- " atpublic-1.0 | py_0 7 KB conda-forge\n",
- " bzip2-1.0.8 | h7f98852_4 484 KB conda-forge\n",
- " cached-property-1.5.2 | hd8ed1ab_1 4 KB conda-forge\n",
- " cached_property-1.5.2 | pyha770c72_1 11 KB conda-forge\n",
- " colorama-0.4.4 | pyh9f0ad1d_0 18 KB conda-forge\n",
- " commonmark-0.9.1 | py_0 46 KB conda-forge\n",
- " configobj-5.0.6 | py_0 31 KB conda-forge\n",
- " dictdiffer-0.8.1 | pyhd8ed1ab_0 16 KB conda-forge\n",
- " diskcache-5.2.1 | pyh44b312d_0 36 KB conda-forge\n",
- " distro-1.5.0 | pyh9f0ad1d_0 20 KB conda-forge\n",
- " dpath-2.0.1 | py39hf3d152e_0 23 KB conda-forge\n",
- " dulwich-0.20.23 | py39h3811e60_0 721 KB conda-forge\n",
- " dvc-2.1.0 | py39hf3d152e_0 551 KB conda-forge\n",
- " flatten-dict-0.3.0 | pyh9f0ad1d_0 11 KB conda-forge\n",
- " flufl.lock-3.2 | py_0 19 KB conda-forge\n",
- " fsspec-0.9.0 | pyhd8ed1ab_2 75 KB conda-forge\n",
- " ftfy-5.5.1 | py_0 47 KB conda-forge\n",
- " funcy-1.16 | pyhd8ed1ab_0 30 KB conda-forge\n",
- " future-0.18.2 | py39hf3d152e_3 718 KB conda-forge\n",
- " grandalf-0.6 | py_0 42 KB conda-forge\n",
- " jsonpath-ng-1.5.2 | pyh9f0ad1d_0 26 KB conda-forge\n",
- " libgit2-1.1.0 | h0b03e73_0 693 KB conda-forge\n",
- " libssh2-1.9.0 | ha56f1ee_6 226 KB conda-forge\n",
- " mailchecker-4.0.7 | pyhd8ed1ab_0 206 KB conda-forge\n",
- " nanotime-0.5.2 | py_0 6 KB conda-forge\n",
- " networkx-2.5 | py_0 1.2 MB conda-forge\n",
- " pathlib2-2.3.5 | py39hf3d152e_3 35 KB conda-forge\n",
- " pathspec-0.8.1 | pyhd3deb0d_0 29 KB conda-forge\n",
- " pcre2-10.35 | h032f7d1_2 693 KB conda-forge\n",
- " phonenumbers-8.10.14 | py_0 1.5 MB conda-forge\n",
- " ply-3.11 | py_1 44 KB conda-forge\n",
- " pyasn1-0.4.8 | py_0 53 KB conda-forge\n",
- " pydot-1.2.4 | py_0 20 KB conda-forge\n",
- " pygit2-1.5.0 | py39h3811e60_0 213 KB conda-forge\n",
- " pygtrie-2.3.2 | pyh8c360ce_0 24 KB conda-forge\n",
- " python-benedict-0.24.0 | pyhd8ed1ab_0 30 KB conda-forge\n",
- " python-fsutil-0.5.0 | pyhd8ed1ab_0 13 KB conda-forge\n",
- " python-slugify-5.0.2 | pyhd8ed1ab_0 12 KB conda-forge\n",
- " rich-10.2.2 | py39hf3d152e_0 337 KB conda-forge\n",
- " ruamel.yaml-0.17.4 | py39h3811e60_0 160 KB conda-forge\n",
- " ruamel.yaml.clib-0.2.2 | py39h3811e60_2 173 KB conda-forge\n",
- " shortuuid-1.0.1 | py39hf3d152e_4 15 KB conda-forge\n",
- " shtab-1.3.6 | pyhd8ed1ab_0 15 KB conda-forge\n",
- " text-unidecode-1.3 | py_0 68 KB conda-forge\n",
- " toml-0.10.2 | pyhd8ed1ab_0 18 KB conda-forge\n",
- " unidecode-1.2.0 | pyhd8ed1ab_0 155 KB conda-forge\n",
- " voluptuous-0.12.1 | pyhd3deb0d_0 28 KB conda-forge\n",
- " zc.lockfile-2.0 | py_0 11 KB conda-forge\n",
- " ------------------------------------------------------------\n",
- " Total: 8.8 MB\n",
- "\n",
- "The following NEW packages will be INSTALLED:\n",
- "\n",
- " _openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-1_gnu\n",
- " appdirs conda-forge/noarch::appdirs-1.4.4-pyh9f0ad1d_0\n",
- " atpublic conda-forge/noarch::atpublic-1.0-py_0\n",
- " bzip2 conda-forge/linux-64::bzip2-1.0.8-h7f98852_4\n",
- " cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1\n",
- " cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1\n",
- " colorama conda-forge/noarch::colorama-0.4.4-pyh9f0ad1d_0\n",
- " commonmark conda-forge/noarch::commonmark-0.9.1-py_0\n",
- " configobj conda-forge/noarch::configobj-5.0.6-py_0\n",
- " dictdiffer conda-forge/noarch::dictdiffer-0.8.1-pyhd8ed1ab_0\n",
- " diskcache conda-forge/noarch::diskcache-5.2.1-pyh44b312d_0\n",
- " distro conda-forge/noarch::distro-1.5.0-pyh9f0ad1d_0\n",
- " dpath conda-forge/linux-64::dpath-2.0.1-py39hf3d152e_0\n",
- " dulwich conda-forge/linux-64::dulwich-0.20.23-py39h3811e60_0\n",
- " dvc conda-forge/linux-64::dvc-2.1.0-py39hf3d152e_0\n",
- " flatten-dict conda-forge/noarch::flatten-dict-0.3.0-pyh9f0ad1d_0\n",
- " flufl.lock conda-forge/noarch::flufl.lock-3.2-py_0\n",
- " fsspec conda-forge/noarch::fsspec-0.9.0-pyhd8ed1ab_2\n",
- " ftfy conda-forge/noarch::ftfy-5.5.1-py_0\n",
- " funcy conda-forge/noarch::funcy-1.16-pyhd8ed1ab_0\n",
- " future conda-forge/linux-64::future-0.18.2-py39hf3d152e_3\n",
- " gitdb conda-forge/noarch::gitdb-4.0.7-pyhd8ed1ab_0\n",
- " gitpython conda-forge/noarch::gitpython-3.1.17-pyhd8ed1ab_0\n",
- " grandalf conda-forge/noarch::grandalf-0.6-py_0\n",
- " jsonpath-ng conda-forge/noarch::jsonpath-ng-1.5.2-pyh9f0ad1d_0\n",
- " libgit2 conda-forge/linux-64::libgit2-1.1.0-h0b03e73_0\n",
- " libgomp conda-forge/linux-64::libgomp-9.3.0-h2828fa1_19\n",
- " libssh2 conda-forge/linux-64::libssh2-1.9.0-ha56f1ee_6\n",
- " mailchecker conda-forge/noarch::mailchecker-4.0.7-pyhd8ed1ab_0\n",
- " nanotime conda-forge/noarch::nanotime-0.5.2-py_0\n",
- " networkx conda-forge/noarch::networkx-2.5-py_0\n",
- " pathlib2 conda-forge/linux-64::pathlib2-2.3.5-py39hf3d152e_3\n",
- " pathspec conda-forge/noarch::pathspec-0.8.1-pyhd3deb0d_0\n",
- " pcre2 conda-forge/linux-64::pcre2-10.35-h032f7d1_2\n",
- " phonenumbers conda-forge/noarch::phonenumbers-8.10.14-py_0\n",
- " pip conda-forge/noarch::pip-21.1.2-pyhd8ed1ab_0\n",
- " ply conda-forge/noarch::ply-3.11-py_1\n",
- " pyasn1 conda-forge/noarch::pyasn1-0.4.8-py_0\n",
- " pydot conda-forge/noarch::pydot-1.2.4-py_0\n",
- " pygit2 conda-forge/linux-64::pygit2-1.5.0-py39h3811e60_0\n",
- " pygtrie conda-forge/noarch::pygtrie-2.3.2-pyh8c360ce_0\n",
- " python-benedict conda-forge/noarch::python-benedict-0.24.0-pyhd8ed1ab_0\n",
- " python-fsutil conda-forge/noarch::python-fsutil-0.5.0-pyhd8ed1ab_0\n",
- " python-slugify conda-forge/noarch::python-slugify-5.0.2-pyhd8ed1ab_0\n",
- " rich conda-forge/linux-64::rich-10.2.2-py39hf3d152e_0\n",
- " ruamel.yaml conda-forge/linux-64::ruamel.yaml-0.17.4-py39h3811e60_0\n",
- " ruamel.yaml.clib conda-forge/linux-64::ruamel.yaml.clib-0.2.2-py39h3811e60_2\n",
- " shortuuid conda-forge/linux-64::shortuuid-1.0.1-py39hf3d152e_4\n",
- " shtab conda-forge/noarch::shtab-1.3.6-pyhd8ed1ab_0\n",
- " smmap conda-forge/noarch::smmap-3.0.5-pyh44b312d_0\n",
- " tabulate conda-forge/noarch::tabulate-0.8.9-pyhd8ed1ab_0\n",
- " text-unidecode conda-forge/noarch::text-unidecode-1.3-py_0\n",
- " toml conda-forge/noarch::toml-0.10.2-pyhd8ed1ab_0\n",
- " typing_extensions conda-forge/noarch::typing_extensions-3.7.4.3-py_0\n",
- " unidecode conda-forge/noarch::unidecode-1.2.0-pyhd8ed1ab_0\n",
- " voluptuous conda-forge/noarch::voluptuous-0.12.1-pyhd3deb0d_0\n",
- " wheel conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0\n",
- " zc.lockfile conda-forge/noarch::zc.lockfile-2.0-py_0\n",
- "\n",
- "The following packages will be UPDATED:\n",
- "\n",
- " certifi pkgs/main::certifi-2020.12.5-py39h06a~ --> conda-forge::certifi-2020.12.5-py39hf3d152e_1\n",
- " libgcc-ng pkgs/main::libgcc-ng-9.1.0-hdf63c60_0 --> conda-forge::libgcc-ng-9.3.0-h2828fa1_19\n",
- "\n",
- "The following packages will be SUPERSEDED by a higher-priority channel:\n",
- "\n",
- " _libgcc_mutex pkgs/main::_libgcc_mutex-0.1-main --> conda-forge::_libgcc_mutex-0.1-conda_forge\n",
- " ca-certificates pkgs/main::ca-certificates-2021.4.13-~ --> conda-forge::ca-certificates-2020.12.5-ha878542_0\n",
- " conda pkgs/main::conda-4.10.1-py39h06a4308_1 --> conda-forge::conda-4.10.1-py39hf3d152e_0\n",
- " openssl pkgs/main::openssl-1.1.1k-h27cfd23_0 --> conda-forge::openssl-1.1.1k-h7f98852_0\n",
- "\n",
- "\n",
- "\n",
- "Downloading and Extracting Packages\n"
+ "Collecting dvc\n",
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+ " Downloading https://files.pythonhosted.org/packages/96/9d/9cca62742cb99da8002c9d6ac6c7463344deb60a219ca4f3a9778b02c67b/dvc-2.8.1-py3-none-any.whl (386kB)\n",
+ "\u001b[K 100% |████████████████████████████████| 389kB 1.4MB/s ta 0:00:01\n",
+ "\u001b[?25hCollecting setuptools>=34.0.0 (from dvc)\n",
+ " Using cached https://files.pythonhosted.org/packages/b0/3a/88b210db68e56854d0bcf4b38e165e03be377e13907746f825790f3df5bf/setuptools-59.6.0-py3-none-any.whl\n",
+ "Collecting colorama>=0.3.9 (from dvc)\n",
+ " Using cached https://files.pythonhosted.org/packages/44/98/5b86278fbbf250d239ae0ecb724f8572af1c91f4a11edf4d36a206189440/colorama-0.4.4-py2.py3-none-any.whl\n",
+ "Collecting dictdiffer>=0.8.1 (from dvc)\n",
+ " Downloading https://files.pythonhosted.org/packages/47/ef/4cb333825d10317a36a1154341ba37e6e9c087bac99c1990ef07ffdb376f/dictdiffer-0.9.0-py2.py3-none-any.whl\n",
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+ "Collecting fsspec[http]>=2021.10.0 (from dvc)\n",
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+ "Collecting shtab<2,>=1.3.4 (from dvc)\n",
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+ "Collecting gitpython>3 (from dvc)\n",
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+ "Collecting pygtrie>=2.3.2 (from dvc)\n",
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+ " Downloading https://files.pythonhosted.org/packages/06/b3/24afc8868eba069a7f03650ac750a778862dc34941a4bebeb58706715726/charset_normalizer-2.0.12-py3-none-any.whl\n",
+ "Collecting asynctest==0.13.0; python_version < \"3.8\" (from aiohttp; extra == \"http\"->fsspec[http]>=2021.10.0->dvc)\n",
+ " Downloading https://files.pythonhosted.org/packages/e8/b6/8d17e169d577ca7678b11cd0d3ceebb0a6089a7f4a2de4b945fe4b1c86db/asynctest-0.13.0-py3-none-any.whl\n",
+ "Collecting yarl<2.0,>=1.0 (from aiohttp; extra == \"http\"->fsspec[http]>=2021.10.0->dvc)\n",
+ " Downloading https://files.pythonhosted.org/packages/fa/cb/8791922f5ec97b9ebec516d062c0e113da963568ffe2c7c04d8187ab7cc3/yarl-1.7.2-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (270kB)\n",
+ "\u001b[K 100% |████████████████████████████████| 276kB 1.9MB/s ta 0:00:01\n",
+ "\u001b[?25hCollecting idna-ssl>=1.0; python_version < \"3.7\" (from aiohttp; extra == \"http\"->fsspec[http]>=2021.10.0->dvc)\n",
+ " Downloading https://files.pythonhosted.org/packages/46/03/07c4894aae38b0de52b52586b24bf189bb83e4ddabfe2e2c8f2419eec6f4/idna-ssl-1.1.0.tar.gz\n",
+ "Collecting frozenlist>=1.1.1 (from aiohttp; extra == \"http\"->fsspec[http]>=2021.10.0->dvc)\n",
+ " Downloading https://files.pythonhosted.org/packages/51/3f/f67395ff0090b9f2835838a1f61c3e840baac70fd65bae762095dead48b2/frozenlist-1.2.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (191kB)\n",
+ "\u001b[K 100% |████████████████████████████████| 194kB 1.2MB/s ta 0:00:01\n",
+ "\u001b[?25hCollecting async-timeout<5.0,>=4.0.0a3 (from aiohttp; extra == \"http\"->fsspec[http]>=2021.10.0->dvc)\n",
+ " Downloading https://files.pythonhosted.org/packages/d6/c1/8991e7c5385b897b8c020cdaad718c5b087a6626d1d11a23e1ea87e325a7/async_timeout-4.0.2-py3-none-any.whl\n",
+ "Collecting aiosignal>=1.1.2 (from aiohttp; extra == \"http\"->fsspec[http]>=2021.10.0->dvc)\n",
+ " Downloading https://files.pythonhosted.org/packages/3b/87/fe94898f2d44a93a35d5aa74671ed28094d80753a1113d68b799fab6dc22/aiosignal-1.2.0-py3-none-any.whl\n",
+ "Collecting attrs>=17.3.0 (from aiohttp; extra == \"http\"->fsspec[http]>=2021.10.0->dvc)\n",
+ " Using cached https://files.pythonhosted.org/packages/be/be/7abce643bfdf8ca01c48afa2ddf8308c2308b0c3b239a44e57d020afa0ef/attrs-21.4.0-py2.py3-none-any.whl\n",
+ "Collecting multidict<7.0,>=4.5 (from aiohttp; extra == \"http\"->fsspec[http]>=2021.10.0->dvc)\n",
+ " Downloading https://files.pythonhosted.org/packages/82/43/81ddfbcfbdfaeaa0624f36dcb715dc8135562377b3292e93b0315a861e92/multidict-5.2.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (159kB)\n",
+ "\u001b[K 100% |████████████████████████████████| 163kB 2.0MB/s ta 0:00:01\n",
+ "\u001b[?25hCollecting smmap<6,>=3.0.1 (from gitdb<5,>=4.0.1->gitpython>3->dvc)\n",
+ " Using cached https://files.pythonhosted.org/packages/6d/01/7caa71608bc29952ae09b0be63a539e50d2484bc37747797a66a60679856/smmap-5.0.0-py3-none-any.whl\n",
+ "Collecting text-unidecode>=1.3 (from python-slugify<7.0.0,>=6.0.1->python-benedict>=0.24.2->dvc)\n",
+ " Downloading https://files.pythonhosted.org/packages/a6/a5/c0b6468d3824fe3fde30dbb5e1f687b291608f9473681bbf7dabbf5a87d7/text_unidecode-1.3-py2.py3-none-any.whl (78kB)\n",
+ "\u001b[K 100% |████████████████████████████████| 81kB 2.2MB/s ta 0:00:01\n",
+ "\u001b[?25hCollecting wcwidth (from ftfy<7.0.0,>=6.0.0->python-benedict>=0.24.2->dvc)\n",
+ " Using cached https://files.pythonhosted.org/packages/59/7c/e39aca596badaf1b78e8f547c807b04dae603a433d3e7a7e04d67f2ef3e5/wcwidth-0.2.5-py2.py3-none-any.whl\n",
+ "Collecting pycparser (from cffi>=1.4.0->pygit2<1.7,>=1.5.0; python_version < \"3.7\"->dvc)\n",
+ " Using cached https://files.pythonhosted.org/packages/62/d5/5f610ebe421e85889f2e55e33b7f9a6795bd982198517d912eb1c76e1a53/pycparser-2.21-py2.py3-none-any.whl\n",
+ "Building wheels for collected packages: nanotime, flufl.lock, psutil, configobj, pygtrie, dulwich, pygit2, contextvars, atpublic, mailchecker, ftfy, future, idna-ssl\n",
+ " Running setup.py bdist_wheel for nanotime ... \u001b[?25ldone\n",
+ "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/41/99/17/7135f635215e1f61e906295afd11f4f791cfe4ab45f3bfdca2\n",
+ " Running setup.py bdist_wheel for flufl.lock ... \u001b[?25ldone\n",
+ "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/4f/51/d7/f65a7b7f37da7594f7021b122fe677187667ad21f1171d2514\n",
+ " Running setup.py bdist_wheel for psutil ... \u001b[?25ldone\n",
+ "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/6e/94/8f/ef906811f8dcf6824a9747df0381615be48d723073fb59a317\n",
+ " Running setup.py bdist_wheel for configobj ... \u001b[?25ldone\n",
+ "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/f1/e4/16/4981ca97c2d65106b49861e0b35e2660695be7219a2d351ee0\n",
+ " Running setup.py bdist_wheel for pygtrie ... \u001b[?25ldone\n",
+ "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/db/57/91/73782136379fe419036c5ec0e4070d8b3a35f2a36bd6a94ed8\n",
+ " Running setup.py bdist_wheel for dulwich ... \u001b[?25ldone\n",
+ "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/63/28/8c/0bbff7d6e30f3fc523639b000b33aba9155152e9eb23689ba0\n",
+ " Running setup.py bdist_wheel for pygit2 ... \u001b[?25lerror\n",
+ " Complete output from command /usr/bin/python3 -u -c \"import setuptools, tokenize;__file__='/tmp/pip-build-hr8mtrcf/pygit2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" bdist_wheel -d /tmp/tmp4kyicel3pip-wheel- --python-tag cp36:\n",
+ " running bdist_wheel\n",
+ " running build\n",
+ " running build_py\n",
+ " creating build\n",
+ " creating build/lib.linux-x86_64-3.6\n",
+ " creating build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/__init__.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/_build.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/_run.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/blame.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/callbacks.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/config.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/credentials.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/errors.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/ffi.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/index.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/packbuilder.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/refspec.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/remote.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/repository.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/settings.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/submodule.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/utils.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " creating build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/attr.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/blame.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/buffer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/callbacks.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/checkout.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/clone.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/common.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/config.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/describe.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/diff.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/errors.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/graph.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/index.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/indexer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/merge.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/net.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/oid.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/pack.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/proxy.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/refspec.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/remote.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/repository.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/revert.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/stash.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/strarray.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/submodule.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/transport.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/types.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " running build_ext\n",
+ " generating cffi module 'build/temp.linux-x86_64-3.6/pygit2._libgit2.c'\n",
+ " creating build/temp.linux-x86_64-3.6\n",
+ " building 'pygit2._pygit2' extension\n",
+ " creating build/temp.linux-x86_64-3.6/src\n",
+ " x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/usr/include/python3.6m -c src/blob.c -o build/temp.linux-x86_64-3.6/src/blob.o\n",
+ " In file included from src/blob.c:30:0:\n",
+ " src/blob.h:33:10: fatal error: git2.h: No such file or directory\n",
+ " #include \n",
+ " ^~~~~~~~\n",
+ " compilation terminated.\n",
+ " error: command 'x86_64-linux-gnu-gcc' failed with exit status 1\n",
+ " \n",
+ " ----------------------------------------\n",
+ "\u001b[31m Failed building wheel for pygit2\u001b[0m\n",
+ "\u001b[?25h Running setup.py clean for pygit2\n"
+ ]
+ },
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ " Running setup.py bdist_wheel for contextvars ... \u001b[?25ldone\n",
+ "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/a5/7d/68/1ebae2668bda2228686e3c1cf16f2c2384cea6e9334ad5f6de\n",
+ " Running setup.py bdist_wheel for atpublic ... \u001b[?25ldone\n",
+ "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/33/25/82/57d46b60a048f8e30b31f10497539498a3b826c78e2433c2d4\n",
+ " Running setup.py bdist_wheel for mailchecker ... \u001b[?25ldone\n",
+ "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/fd/e1/e7/804e77a70eac7103bdba2f4b3e1eba36840b38554a4b8152c8\n",
+ " Running setup.py bdist_wheel for ftfy ... \u001b[?25ldone\n",
+ "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/99/2c/e6/109c8a28fef7a443f67ba58df21fe1d0067ac3322e75e6b0b7\n",
+ " Running setup.py bdist_wheel for future ... \u001b[?25ldone\n",
+ "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/8b/99/a0/81daf51dcd359a9377b110a8a886b3895921802d2fc1b2397e\n",
+ " Running setup.py bdist_wheel for idna-ssl ... \u001b[?25ldone\n",
+ "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/d3/00/b3/32d613e19e08a739751dd6bf998cfed277728f8b2127ad4eb7\n",
+ "Successfully built nanotime flufl.lock psutil configobj pygtrie dulwich contextvars atpublic mailchecker ftfy future idna-ssl\n",
+ "Failed to build pygit2\n",
+ "Installing collected packages: setuptools, colorama, dictdiffer, ply, nanotime, asynctest, idna, multidict, typing-extensions, yarl, idna-ssl, frozenlist, async-timeout, aiosignal, charset-normalizer, attrs, aiohttp, certifi, urllib3, requests, fsspec, decorator, networkx, atpublic, flufl.lock, shtab, shortuuid, smmap, gitdb, gitpython, zipp, importlib-resources, tqdm, zc.lockfile, dataclasses, commonmark, pygments, rich, aiohttp-retry, voluptuous, psutil, six, importlib-metadata, flatten-dict, configobj, pygtrie, tabulate, dulwich, appdirs, ruamel.yaml.clib, ruamel.yaml, text-unidecode, python-slugify, python-fsutil, mailchecker, pyyaml, toml, xmltodict, phonenumbers, wcwidth, ftfy, python-dateutil, python-benedict, future, pyparsing, grandalf, dpath, pycparser, cffi, cached-property, pygit2, pyasn1, pathspec, immutables, contextvars, distro, packaging, diskcache, pydot, funcy, dvc\n",
+ " Running setup.py install for pygit2 ... \u001b[?25lerror\n",
+ " Complete output from command /usr/bin/python3 -u -c \"import setuptools, tokenize;__file__='/tmp/pip-build-hr8mtrcf/pygit2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" install --record /tmp/pip-6tml5js1-record/install-record.txt --single-version-externally-managed --compile --user --prefix=:\n",
+ " running install\n",
+ " /home/tomek/.local/lib/python3.6/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.\n",
+ " setuptools.SetuptoolsDeprecationWarning,\n",
+ " running build\n",
+ " running build_py\n",
+ " creating build\n",
+ " creating build/lib.linux-x86_64-3.6\n",
+ " creating build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/__init__.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/_build.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/_run.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/blame.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/callbacks.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/config.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/credentials.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/errors.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/ffi.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/index.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/packbuilder.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/refspec.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/remote.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/repository.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/settings.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/submodule.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " copying pygit2/utils.py -> build/lib.linux-x86_64-3.6/pygit2\n",
+ " creating build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/attr.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/blame.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/buffer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/callbacks.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/checkout.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/clone.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/common.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/config.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/describe.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/diff.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/errors.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/graph.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/index.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/indexer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/merge.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/net.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/oid.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/pack.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/proxy.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/refspec.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/remote.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/repository.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/revert.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/stash.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/strarray.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/submodule.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/transport.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " copying pygit2/decl/types.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
+ " running build_ext\n",
+ " generating cffi module 'build/temp.linux-x86_64-3.6/pygit2._libgit2.c'\n",
+ " creating build/temp.linux-x86_64-3.6\n",
+ " building 'pygit2._pygit2' extension\n",
+ " creating build/temp.linux-x86_64-3.6/src\n",
+ " x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/usr/include/python3.6m -c src/blob.c -o build/temp.linux-x86_64-3.6/src/blob.o\n",
+ " In file included from src/blob.c:30:0:\n",
+ " src/blob.h:33:10: fatal error: git2.h: No such file or directory\n",
+ " #include \n",
+ " ^~~~~~~~\n",
+ " compilation terminated.\n",
+ " error: command 'x86_64-linux-gnu-gcc' failed with exit status 1\n",
+ " \n",
+ " ----------------------------------------\n",
+ "\u001b[31mCommand \"/usr/bin/python3 -u -c \"import setuptools, tokenize;__file__='/tmp/pip-build-hr8mtrcf/pygit2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" install --record /tmp/pip-6tml5js1-record/install-record.txt --single-version-externally-managed --compile --user --prefix=\" failed with error code 1 in /tmp/pip-build-hr8mtrcf/pygit2/\u001b[0m\n",
+ "\u001b[?25h"
]
}
],
"source": [
- "conda install dvc"
+ "!pip3 install dvc"
]
},
{
@@ -525,10 +737,11 @@
" - dużymi plikami, takimi jak plikami z danymi wejściowymi czy plikami modeli, trudno zarządza się za pomocą gita, ze względu na problemy z:\n",
" - wydajnością\n",
" - przestrzenią w repozytorium\n",
+ " - ograniczenia ze strony serwisu (np. [limit 100 MB na plik w Github](https://docs.github.com/en/repositories/working-with-files/managing-large-files/about-large-files-on-github))\n",
" - Git posiada rozszerzenie [lfs(Large File Storage)](https://git-lfs.github.com/), które stanowi pewne rozwiązanie tego problemu. Same pliki przechowywane są na specjalnym zdalnym serwerze, w repozytorium przechowywane są jedynie odnośniki do tych plików i pewne metadane\n",
" - DVC proponuje podobne podejście, ale:\n",
" - pliki mogą być przechowywane na niemal dowolnym serwerze, również lokalnie\n",
- " - brak limitu wielkości plików (w Git-LFS najczęściej limit 2GB)\n",
+ " - brak limitu wielkości plików (w Git-LFS na Github [limit 2GB](https://docs.github.com/en/repositories/working-with-files/managing-large-files/about-git-large-file-storage))\n",
" - DVC zapewnia dodatkowe narzędzie umożliwiające śledzenie plików i ich powiązań z wynikami eksperymentów\n",
" - więcej, patrz [tutaj](https://dvc.org/doc/user-guide/related-technologies)"
]
@@ -776,6 +989,28 @@
"!ls -l .dvc/cache/71"
]
},
+ {
+ "cell_type": "code",
+ "execution_count": 1,
+ "id": "91da7848",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ }
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "ls: cannot access './data': No such file or directory\r\n"
+ ]
+ }
+ ],
+ "source": [
+ "!ls -l ./data"
+ ]
+ },
{
"cell_type": "markdown",
"id": "901e8e90",
@@ -792,6 +1027,26 @@
" - w realnych zastosowaniach podalibyśmy tutaj ścieżkę do jakiegoś zasobu dostępnego przez inernet jak np. serwer SFTP, ścieżka do AWS S3 itp."
]
},
+ {
+ "cell_type": "markdown",
+ "id": "19b76570",
+ "metadata": {},
+ "source": [
+ "Obsługiwane typy zdalnych lokalizacji (remotes): https://dvc.org/doc/command-reference/remote/add#supported-storage-types\n",
+ " - Amazon S3\n",
+ " - S3-compatible storage\n",
+ " - Microsoft Azure Blob Storage\n",
+ " - Google Drive\n",
+ " - Google Cloud Storage\n",
+ " - Aliyun OSS\n",
+ " - SSH\n",
+ " - HDFS\n",
+ " - WebHDFS\n",
+ " - HTTP\n",
+ " - WebDAV\n",
+ " - local remote"
+ ]
+ },
{
"cell_type": "code",
"execution_count": 28,
@@ -944,7 +1199,7 @@
}
},
"source": [
- "Dodawanie nowych plików i modyfikacja istniejących wygląda tak podobnie jak przy zwykłych plikach śledzonych przez git, tylko zamiast `git` używamy polecenia `dvc` a dodatkowo pamiętamy o zarządzaniu plikami `*.dvc` za pomocą gita:"
+ "Dodawanie nowych plików i modyfikacja istniejących wygląda podobnie jak przy zwykłych plikach śledzonych przez git, tylko zamiast `git` używamy polecenia `dvc` a dodatkowo pamiętamy o zarządzaniu plikami `*.dvc` za pomocą gita:"
]
},
{
@@ -1637,7 +1892,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.9.1"
+ "version": "3.6.9"
},
"slideshow": {
"slide_type": "slide"