forked from AITech/aitech-ium
Merge pull request 'master' (#32) from tzietkiewicz/aitech-ium:master into master
Reviewed-on: AITech/aitech-ium#32
This commit is contained in:
commit
19f229b3e6
@ -1606,7 +1606,10 @@
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" - parametry, z którymi wywołany był trening\n",
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" - parametry, z którymi wywołany był trening\n",
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" - powstały plik z modelem (jako artefakt)\n",
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" - powstały plik z modelem (jako artefakt)\n",
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" - kod źródłowy użyty do przeprowadzenia treningu\n",
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" - kod źródłowy użyty do przeprowadzenia treningu\n",
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" - wyniki (np. ostateczny loss albo wyniki ewaluacji)\n",
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" - metryki\n",
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" \n",
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"Jako nazwę eksperymentu użyj swojego numeru indeksu tak, żebyś mogła/mógł je odnaleźć w Omniboard\n",
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"\n",
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"2. Wykorzystaj 2 obserwatory [5pkt]: \n",
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"2. Wykorzystaj 2 obserwatory [5pkt]: \n",
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" - MongoObserver, skorzytaj nastęþującego URL: `mongodb://admin:IUM_2021@172.17.0.1:27017` (będziesz mógł przeglądać wyniki na http://tzietkiewicz.vm.wmi.amu.edu.pl:9000/sacred)\n",
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" - MongoObserver, skorzytaj nastęþującego URL: `mongodb://admin:IUM_2021@172.17.0.1:27017` (będziesz mógł przeglądać wyniki na http://tzietkiewicz.vm.wmi.amu.edu.pl:9000/sacred)\n",
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" - FileObserver - zapisane pliki zarchiwizuj na Jenkinsie jako jego artefakty\n"
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" - FileObserver - zapisane pliki zarchiwizuj na Jenkinsie jako jego artefakty\n"
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@ -1424,7 +1424,7 @@
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" - Python: `mlflow.set_tracking_uri(\"http://172.17.0.1:5000\")`\n",
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" - Python: `mlflow.set_tracking_uri(\"http://172.17.0.1:5000\")`\n",
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" - CLI: `export MLFLOW_TRACKING_URI=http://172.17.0.1:5000`\n",
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" - CLI: `export MLFLOW_TRACKING_URI=http://172.17.0.1:5000`\n",
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" \n",
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" \n",
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"- Żeby klient MLflow działający w kontenerze docker mógł zapisywać i pdczytywać artefakty, muszą Państwo podmonotwać katalog `/tmp/mlruns`. Można to zrobić za pomocą flagi `-v`, którą można przekazać tak, jak pokazano tutaj: https://www.jenkins.io/doc/book/pipeline/docker/#caching-data-for-containers\n",
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"- Żeby klient MLflow działający w kontenerze docker mógł zapisywać i pdczytywać artefakty, muszą Państwo podmonotwać katalog `/tmp/mlruns` i `/mlruns` (ten drugi po to, żeby po restarcie serwera katalog nie został wyczyszczony)\n",
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"- Proszę ustawić nazwę eksperymentu na numer indeksu, dzięki temu każdy z Państwa będzie widział swoje eksperymenty oddzielnie:\n",
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"- Proszę ustawić nazwę eksperymentu na numer indeksu, dzięki temu każdy z Państwa będzie widział swoje eksperymenty oddzielnie:\n",
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"`mlflow.set_experiment(\"s123456\")`"
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"`mlflow.set_experiment(\"s123456\")`"
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]
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]
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@ -13,7 +13,7 @@
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"<div class=\"alert alert-block alert-info\">\n",
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"<div class=\"alert alert-block alert-info\">\n",
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"<h1> Inżynieria uczenia maszynowego </h1>\n",
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"<h1> Inżynieria uczenia maszynowego </h1>\n",
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"<h2> 9. <i>Środowiska wirtualne</i> [laboratoria]</h2> \n",
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"<h2> 9. <i>Środowiska wirtualne</i> [laboratoria]</h2> \n",
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"<h3> Tomasz Ziętkiewicz (2021)</h3>\n",
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"<h3> Tomasz Ziętkiewicz (2022)</h3>\n",
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"</div>\n",
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"</div>\n",
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"\n",
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"\n",
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""
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""
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@ -173,7 +173,7 @@
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},
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},
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{
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{
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"cell_type": "markdown",
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"cell_type": "markdown",
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"id": "26f253cb",
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"id": "a8aca05d",
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"metadata": {
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"metadata": {
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"slideshow": {
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"slideshow": {
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"slide_type": "slide"
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"slide_type": "slide"
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@ -189,8 +189,18 @@
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" - środowiskami (jak venv)\n",
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" - środowiskami (jak venv)\n",
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" - paczkami i zależnościami (jak pip)\n",
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" - paczkami i zależnościami (jak pip)\n",
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"\n",
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"\n",
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"Dokumentacja: https://docs.conda.io/en/latest/\n",
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"Dokumentacja: https://docs.conda.io/en/latest/"
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"\n",
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]
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},
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{
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"cell_type": "markdown",
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"id": "26f253cb",
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"metadata": {
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"slideshow": {
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"slide_type": "slide"
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}
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},
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"source": [
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"Różnice między Conda a venv [źródło](https://docs.conda.io/projects/conda/en/latest/user-guide/concepts/environments.html#virtual-environments):\n",
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"Różnice między Conda a venv [źródło](https://docs.conda.io/projects/conda/en/latest/user-guide/concepts/environments.html#virtual-environments):\n",
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" - Dowolna wersja Python w Conda (inna niż systemowa)\n",
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" - Dowolna wersja Python w Conda (inna niż systemowa)\n",
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" - Conda zarządza też zależnościami innymi niż Pythonowe\n",
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" - Conda zarządza też zależnościami innymi niż Pythonowe\n",
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@ -220,6 +230,8 @@
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" - Zawiera narzędzi GUI [Anaconda Navigator](https://docs.anaconda.com/anaconda/navigator/) (można je doinstalować do Miniconda)\n",
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" - Zawiera narzędzi GUI [Anaconda Navigator](https://docs.anaconda.com/anaconda/navigator/) (można je doinstalować do Miniconda)\n",
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" - zawiera to co Miniconda +:\n",
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" - zawiera to co Miniconda +:\n",
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" - Ponad 1500 preinstalowanych pakietów, głównie \"naukowych\", m.in.: SciPy, NumPy, Jupyter, scikit-learn, Pandas\n",
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" - Ponad 1500 preinstalowanych pakietów, głównie \"naukowych\", m.in.: SciPy, NumPy, Jupyter, scikit-learn, Pandas\n",
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" - bezpłatna dla użytkowników indywidualnych, małych firm i orgranizacji non-profit (\"Anaconda distribution\")\n",
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" - płatna dla dużych firm (+200 osób i instytucji rządowych (\"Anaconda Proferssional\")\n",
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" "
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" "
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]
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]
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},
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},
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"name": "python",
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"name": "python",
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"nbconvert_exporter": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"pygments_lexer": "ipython3",
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"version": "3.9.1"
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"version": "3.6.9"
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},
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},
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"slideshow": {
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"slideshow": {
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"slide_type": "slide"
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675
IUM_10.DVC.ipynb
675
IUM_10.DVC.ipynb
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"<div class=\"alert alert-block alert-info\">\n",
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"<div class=\"alert alert-block alert-info\">\n",
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"<h1> Inżynieria uczenia maszynowego </h1>\n",
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"<h1> Inżynieria uczenia maszynowego </h1>\n",
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"<h2> 10. <i>DVC</i> [laboratoria]</h2> \n",
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"<h2> 10. <i>DVC</i> [laboratoria]</h2> \n",
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"<h3> Tomasz Ziętkiewicz (2021)</h3>\n",
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"<h3> Tomasz Ziętkiewicz (2022)</h3>\n",
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"</div>\n",
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"</div>\n",
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"\n",
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"\n",
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""
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""
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"- Umożliwia:\n",
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"- Umożliwia:\n",
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" - wersjonowanie danych i modeli. \"Git dla danych i modeli\"\n",
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" - wersjonowanie danych i modeli. \"Git dla danych i modeli\"\n",
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" - budowanie potoków (\"pipeline\") definiujących jak budować/trenować/ewaluować modele. \"Makefile dla uczenia maszynowego\"\n",
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" - budowanie potoków (\"pipeline\") definiujących jak budować/trenować/ewaluować modele. \"Makefile dla uczenia maszynowego\"\n",
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" - śledzeniem, porównywanie metryk i parametrów\n",
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" - śledzenie, porównywanie metryk i parametrów\n",
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"- ściśle zintegowany z gitem\n",
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"- ściśle zintegowany z gitem\n",
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"- działa niezależnie od używanego języka/bibliotek i systemu operacyjnego\n",
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"- działa niezależnie od używanego języka/bibliotek i systemu operacyjnego\n",
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"- 5-minutowe wprowadzenie: https://www.youtube.com/watch?v=UbL7VUpv1Bs&t=197s"
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"- 5-minutowe wprowadzenie: https://www.youtube.com/watch?v=UbL7VUpv1Bs&t=197s"
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},
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{
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"cell_type": "code",
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"cell_type": "code",
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"execution_count": 10,
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"execution_count": 7,
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"id": "054c7a11",
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"metadata": {
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"name": "stdout",
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"name": "stdout",
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"output_type": "stream",
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"output_type": "stream",
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"text": [
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"text": [
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"Collecting package metadata (current_repodata.json): done\n",
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"Collecting dvc\n",
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"Solving environment: failed with initial frozen solve. Retrying with flexible solve.\n",
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"\u001b[33m Cache entry deserialization failed, entry ignored\u001b[0m\n",
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"Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.\n",
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" Downloading https://files.pythonhosted.org/packages/96/9d/9cca62742cb99da8002c9d6ac6c7463344deb60a219ca4f3a9778b02c67b/dvc-2.8.1-py3-none-any.whl (386kB)\n",
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"Collecting package metadata (repodata.json): done\n",
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"\u001b[K 100% |████████████████████████████████| 389kB 1.4MB/s ta 0:00:01\n",
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"Solving environment: done\n",
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"\u001b[?25hCollecting setuptools>=34.0.0 (from dvc)\n",
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"\n",
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" Using cached https://files.pythonhosted.org/packages/b0/3a/88b210db68e56854d0bcf4b38e165e03be377e13907746f825790f3df5bf/setuptools-59.6.0-py3-none-any.whl\n",
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"## Package Plan ##\n",
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"Collecting colorama>=0.3.9 (from dvc)\n",
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"\n",
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" Using cached https://files.pythonhosted.org/packages/44/98/5b86278fbbf250d239ae0ecb724f8572af1c91f4a11edf4d36a206189440/colorama-0.4.4-py2.py3-none-any.whl\n",
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" environment location: /home/tomek/miniconda3\n",
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"Collecting dictdiffer>=0.8.1 (from dvc)\n",
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"\n",
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" Downloading https://files.pythonhosted.org/packages/47/ef/4cb333825d10317a36a1154341ba37e6e9c087bac99c1990ef07ffdb376f/dictdiffer-0.9.0-py2.py3-none-any.whl\n",
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" added / updated specs:\n",
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"Collecting ply>=3.9 (from dvc)\n",
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" - dvc\n",
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"\n",
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" Downloading https://files.pythonhosted.org/packages/a3/58/35da89ee790598a0700ea49b2a66594140f44dec458c07e8e3d4979137fc/ply-3.11-py2.py3-none-any.whl (49kB)\n",
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"The following packages will be downloaded:\n",
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"\u001b[K 100% |████████████████████████████████| 51kB 1.8MB/s ta 0:00:01\n",
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"\n",
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"\u001b[?25hCollecting nanotime>=0.5.2 (from dvc)\n",
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" package | build\n",
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" ---------------------------|-----------------\n",
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" atpublic-1.0 | py_0 7 KB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/d5/54/6d5924f59cf671326e7809f4b3f70fa8df535d67e952ad0b6fea02f52faf/nanotime-0.5.2.tar.gz\n",
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" bzip2-1.0.8 | h7f98852_4 484 KB conda-forge\n",
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"Collecting fsspec[http]>=2021.10.0 (from dvc)\n",
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" cached-property-1.5.2 | hd8ed1ab_1 4 KB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/f6/90/32e53b96067954c2f916667f5a11634aeabef8ed70e83133ed8037b8111b/fsspec-2022.1.0-py3-none-any.whl (133kB)\n",
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" cached_property-1.5.2 | pyha770c72_1 11 KB conda-forge\n",
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"\u001b[K 100% |████████████████████████████████| 143kB 1.3MB/s ta 0:00:01\n",
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" colorama-0.4.4 | pyh9f0ad1d_0 18 KB conda-forge\n",
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"\u001b[?25hCollecting networkx>=2.5 (from dvc)\n",
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" commonmark-0.9.1 | py_0 46 KB conda-forge\n",
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"\u001b[33m Cache entry deserialization failed, entry ignored\u001b[0m\n",
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" configobj-5.0.6 | py_0 31 KB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/f3/b7/c7f488101c0bb5e4178f3cde416004280fd40262433496830de8a8c21613/networkx-2.5.1-py3-none-any.whl (1.6MB)\n",
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" dictdiffer-0.8.1 | pyhd8ed1ab_0 16 KB conda-forge\n",
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"\u001b[K 100% |████████████████████████████████| 1.6MB 609kB/s ta 0:00:01\n",
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" diskcache-5.2.1 | pyh44b312d_0 36 KB conda-forge\n",
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"\u001b[?25hCollecting flufl.lock<4,>=3.2 (from dvc)\n",
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" distro-1.5.0 | pyh9f0ad1d_0 20 KB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/1e/68/393c148df629f90a919de653ebb967a8bd8c83d07d2bc3150ca0faff3940/flufl.lock-3.2.tar.gz\n",
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" dpath-2.0.1 | py39hf3d152e_0 23 KB conda-forge\n",
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"Collecting shtab<2,>=1.3.4 (from dvc)\n",
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" dulwich-0.20.23 | py39h3811e60_0 721 KB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/37/c0/7d887589bb87db6b87b55315ac41acbbe7355074006a0968343d52ded5cd/shtab-1.5.4-py2.py3-none-any.whl\n",
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" dvc-2.1.0 | py39hf3d152e_0 551 KB conda-forge\n",
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"Collecting shortuuid>=0.5.0 (from dvc)\n",
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" flatten-dict-0.3.0 | pyh9f0ad1d_0 11 KB conda-forge\n",
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" flufl.lock-3.2 | py_0 19 KB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/01/14/df1aa61e1bb75a6fff19b25d7d175b7f188dc15a70dfc80e7badd5bda1de/shortuuid-1.0.9-py3-none-any.whl\n",
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" fsspec-0.9.0 | pyhd8ed1ab_2 75 KB conda-forge\n",
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"Collecting gitpython>3 (from dvc)\n",
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" ftfy-5.5.1 | py_0 47 KB conda-forge\n",
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" Using cached https://files.pythonhosted.org/packages/55/60/f884f01eef2a7255875862ec1b12d57d74113ec6e8d9e16c4d254cd6aa3c/GitPython-3.1.20-py3-none-any.whl\n",
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" funcy-1.16 | pyhd8ed1ab_0 30 KB conda-forge\n",
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"Collecting tqdm<5,>=4.45.0 (from dvc)\n",
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" future-0.18.2 | py39hf3d152e_3 718 KB conda-forge\n",
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" grandalf-0.6 | py_0 42 KB conda-forge\n",
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" jsonpath-ng-1.5.2 | pyh9f0ad1d_0 26 KB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/8a/c4/d15f1e627fff25443ded77ea70a7b5532d6371498f9285d44d62587e209c/tqdm-4.64.0-py2.py3-none-any.whl (78kB)\n",
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" libgit2-1.1.0 | h0b03e73_0 693 KB conda-forge\n",
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" libssh2-1.9.0 | ha56f1ee_6 226 KB conda-forge\n",
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"\u001b[?25hCollecting zc.lockfile>=1.2.1 (from dvc)\n",
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" mailchecker-4.0.7 | pyhd8ed1ab_0 206 KB conda-forge\n",
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" nanotime-0.5.2 | py_0 6 KB conda-forge\n",
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" networkx-2.5 | py_0 1.2 MB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/6c/2a/268389776288f0f26c7272c70c36c96dcc0bdb88ab6216ea18e19df1fadd/zc.lockfile-2.0-py2.py3-none-any.whl\n",
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" pathlib2-2.3.5 | py39hf3d152e_3 35 KB conda-forge\n",
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"Collecting rich>=10.9.0 (from dvc)\n",
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" pathspec-0.8.1 | pyhd3deb0d_0 29 KB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/05/c0/844c879d659e15c4b1fbe8be89b25de7cf9b0d5e8485aadfe83ae6e7286a/rich-12.4.1-py3-none-any.whl (231kB)\n",
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" pcre2-10.35 | h032f7d1_2 693 KB conda-forge\n",
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" phonenumbers-8.10.14 | py_0 1.5 MB conda-forge\n",
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"\u001b[?25hCollecting aiohttp-retry>=2.4.5 (from dvc)\n",
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" ply-3.11 | py_1 44 KB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/0f/fe/58130a432d4397e174b82e57d8a11ccf5066631d03949dada4aac8b88041/aiohttp_retry-2.4.6-py3-none-any.whl\n",
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" pyasn1-0.4.8 | py_0 53 KB conda-forge\n",
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"Collecting voluptuous>=0.11.7 (from dvc)\n",
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" pydot-1.2.4 | py_0 20 KB conda-forge\n",
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"\u001b[33m Cache entry deserialization failed, entry ignored\u001b[0m\n",
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" pygit2-1.5.0 | py39h3811e60_0 213 KB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/a7/68/927add5dfd55a0d666ffc8939ff4390b76ca3ffbc36c12369f9a034393cb/voluptuous-0.13.1-py3-none-any.whl\n",
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" pygtrie-2.3.2 | pyh8c360ce_0 24 KB conda-forge\n",
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"Collecting psutil>=5.8.0 (from dvc)\n",
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" python-benedict-0.24.0 | pyhd8ed1ab_0 30 KB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/d6/de/0999ea2562b96d7165812606b18f7169307b60cd378bc29cf3673322c7e9/psutil-5.9.1.tar.gz (479kB)\n",
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" python-fsutil-0.5.0 | pyhd8ed1ab_0 13 KB conda-forge\n",
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"\u001b[K 100% |████████████████████████████████| 481kB 1.2MB/s ta 0:00:011\n",
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" python-slugify-5.0.2 | pyhd8ed1ab_0 12 KB conda-forge\n",
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"\u001b[?25hCollecting flatten-dict<1,>=0.4.1 (from dvc)\n",
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" rich-10.2.2 | py39hf3d152e_0 337 KB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/43/f5/ee39c6e92acc742c052f137b47c210cd0a1b72dcd3f98495528bb4d27761/flatten_dict-0.4.2-py2.py3-none-any.whl\n",
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" ruamel.yaml-0.17.4 | py39h3811e60_0 160 KB conda-forge\n",
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"Collecting configobj>=5.0.6 (from dvc)\n",
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" ruamel.yaml.clib-0.2.2 | py39h3811e60_2 173 KB conda-forge\n",
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" shortuuid-1.0.1 | py39hf3d152e_4 15 KB conda-forge\n",
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"\u001b[33m Cache entry deserialization failed, entry ignored\u001b[0m\n",
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" shtab-1.3.6 | pyhd8ed1ab_0 15 KB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/64/61/079eb60459c44929e684fa7d9e2fdca403f67d64dd9dbac27296be2e0fab/configobj-5.0.6.tar.gz\n",
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" text-unidecode-1.3 | py_0 68 KB conda-forge\n",
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"Collecting pygtrie>=2.3.2 (from dvc)\n",
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" toml-0.10.2 | pyhd8ed1ab_0 18 KB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/a5/8b/90d0f21a27a354e808a73eb0ffb94db990ab11ad1d8b3db3e5196c882cad/pygtrie-2.4.2.tar.gz\n",
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" unidecode-1.2.0 | pyhd8ed1ab_0 155 KB conda-forge\n",
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"Collecting tabulate>=0.8.7 (from dvc)\n",
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" voluptuous-0.12.1 | pyhd3deb0d_0 28 KB conda-forge\n",
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" Downloading https://files.pythonhosted.org/packages/ca/80/7c0cad11bd99985cfe7c09427ee0b4f9bd6b048bd13d4ffb32c6db237dfb/tabulate-0.8.9-py3-none-any.whl\n",
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" zc.lockfile-2.0 | py_0 11 KB conda-forge\n",
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"Collecting dulwich>=0.20.23 (from dvc)\n",
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" ------------------------------------------------------------\n",
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" Downloading https://files.pythonhosted.org/packages/50/88/d5f6b478086a78995a71151a956ac97d6635f0f6d80f625c96ba13cc612d/dulwich-0.20.40.tar.gz (423kB)\n",
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" Total: 8.8 MB\n",
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"\u001b[K 100% |████████████████████████████████| 430kB 1.1MB/s ta 0:00:01\n",
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"\n",
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"\u001b[?25hCollecting appdirs>=1.4.3 (from dvc)\n",
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"The following NEW packages will be INSTALLED:\n",
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" _openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-1_gnu\n",
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" Downloading https://files.pythonhosted.org/packages/3b/00/2344469e2084fb287c2e0b57b72910309874c3245463acd6cf5e3db69324/appdirs-1.4.4-py2.py3-none-any.whl\n",
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" appdirs conda-forge/noarch::appdirs-1.4.4-pyh9f0ad1d_0\n",
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"Collecting ruamel.yaml>=0.17.11 (from dvc)\n",
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" atpublic conda-forge/noarch::atpublic-1.0-py_0\n",
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"\u001b[33m Cache entry deserialization failed, entry ignored\u001b[0m\n",
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" bzip2 conda-forge/linux-64::bzip2-1.0.8-h7f98852_4\n",
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" Downloading https://files.pythonhosted.org/packages/9e/cb/938214ac358fbef7058343b3765c79a1b7ed0c366f7f992ce7ff38335652/ruamel.yaml-0.17.21-py3-none-any.whl (109kB)\n",
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" cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1\n",
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"\u001b[K 100% |████████████████████████████████| 112kB 2.1MB/s ta 0:00:01\n",
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" cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1\n",
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"\u001b[?25hCollecting python-benedict>=0.24.2 (from dvc)\n",
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" colorama conda-forge/noarch::colorama-0.4.4-pyh9f0ad1d_0\n",
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" Downloading https://files.pythonhosted.org/packages/77/84/6268f9c31140f23ef290c89cb91197f5ea6cbbf102a15db13c1eea845a22/python_benedict-0.25.1-py3-none-any.whl (41kB)\n",
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" commonmark conda-forge/noarch::commonmark-0.9.1-py_0\n",
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"\u001b[K 100% |████████████████████████████████| 51kB 2.2MB/s ta 0:00:01\n",
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" configobj conda-forge/noarch::configobj-5.0.6-py_0\n",
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"\u001b[?25hCollecting grandalf==0.6 (from dvc)\n",
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" dictdiffer conda-forge/noarch::dictdiffer-0.8.1-pyhd8ed1ab_0\n",
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"\u001b[33m Cache entry deserialization failed, entry ignored\u001b[0m\n",
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" diskcache conda-forge/noarch::diskcache-5.2.1-pyh44b312d_0\n",
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" Downloading https://files.pythonhosted.org/packages/54/f4/a0b6a4c6d616d0a838b2dd0bc7bf74d73e8e8cdc880bab7fdb5fdc3d0e06/grandalf-0.6-py3-none-any.whl\n",
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" distro conda-forge/noarch::distro-1.5.0-pyh9f0ad1d_0\n",
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"Collecting pyparsing==2.4.7 (from dvc)\n",
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" dpath conda-forge/linux-64::dpath-2.0.1-py39hf3d152e_0\n",
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"\u001b[33m Cache entry deserialization failed, entry ignored\u001b[0m\n",
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" dulwich conda-forge/linux-64::dulwich-0.20.23-py39h3811e60_0\n",
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" Downloading https://files.pythonhosted.org/packages/8a/bb/488841f56197b13700afd5658fc279a2025a39e22449b7cf29864669b15d/pyparsing-2.4.7-py2.py3-none-any.whl (67kB)\n",
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" dvc conda-forge/linux-64::dvc-2.1.0-py39hf3d152e_0\n",
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"\u001b[K 100% |████████████████████████████████| 71kB 2.1MB/s ta 0:00:01\n",
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" flatten-dict conda-forge/noarch::flatten-dict-0.3.0-pyh9f0ad1d_0\n",
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"\u001b[?25hCollecting dpath<3,>=2.0.2 (from dvc)\n",
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" flufl.lock conda-forge/noarch::flufl.lock-3.2-py_0\n",
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" Downloading https://files.pythonhosted.org/packages/9d/68/19b2a579121446ba80aa3574f04de6931ad549a22cd5588e43c8031de7f8/dpath-2.0.6-py3-none-any.whl\n",
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" fsspec conda-forge/noarch::fsspec-0.9.0-pyhd8ed1ab_2\n",
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"Collecting pygit2<1.7,>=1.5.0; python_version < \"3.7\" (from dvc)\n",
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" ftfy conda-forge/noarch::ftfy-5.5.1-py_0\n",
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" Downloading https://files.pythonhosted.org/packages/6b/23/a8c5b726a58282fe2cadcc63faaddd4be147c3c8e0bd38b233114adf98fd/pygit2-1.6.1.tar.gz (258kB)\n",
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" funcy conda-forge/noarch::funcy-1.16-pyhd8ed1ab_0\n",
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"\u001b[K 100% |████████████████████████████████| 266kB 3.5MB/s eta 0:00:01\n",
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" future conda-forge/linux-64::future-0.18.2-py39hf3d152e_3\n",
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"\u001b[?25hCollecting dataclasses>=0.7; python_version < \"3.7\" (from dvc)\n",
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" gitdb conda-forge/noarch::gitdb-4.0.7-pyhd8ed1ab_0\n",
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" Using cached https://files.pythonhosted.org/packages/fe/ca/75fac5856ab5cfa51bbbcefa250182e50441074fdc3f803f6e76451fab43/dataclasses-0.8-py3-none-any.whl\n",
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" gitpython conda-forge/noarch::gitpython-3.1.17-pyhd8ed1ab_0\n",
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"Collecting pyasn1>=0.4.1 (from dvc)\n",
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" grandalf conda-forge/noarch::grandalf-0.6-py_0\n",
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" jsonpath-ng conda-forge/noarch::jsonpath-ng-1.5.2-pyh9f0ad1d_0\n",
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" libgit2 conda-forge/linux-64::libgit2-1.1.0-h0b03e73_0\n",
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" libgomp conda-forge/linux-64::libgomp-9.3.0-h2828fa1_19\n",
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" libssh2 conda-forge/linux-64::libssh2-1.9.0-ha56f1ee_6\n",
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" mailchecker conda-forge/noarch::mailchecker-4.0.7-pyhd8ed1ab_0\n",
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" nanotime conda-forge/noarch::nanotime-0.5.2-py_0\n",
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" networkx conda-forge/noarch::networkx-2.5-py_0\n",
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" pathlib2 conda-forge/linux-64::pathlib2-2.3.5-py39hf3d152e_3\n",
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" pathspec conda-forge/noarch::pathspec-0.8.1-pyhd3deb0d_0\n",
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" pcre2 conda-forge/linux-64::pcre2-10.35-h032f7d1_2\n",
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" phonenumbers conda-forge/noarch::phonenumbers-8.10.14-py_0\n",
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" pip conda-forge/noarch::pip-21.1.2-pyhd8ed1ab_0\n",
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" ply conda-forge/noarch::ply-3.11-py_1\n",
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" pyasn1 conda-forge/noarch::pyasn1-0.4.8-py_0\n",
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" pydot conda-forge/noarch::pydot-1.2.4-py_0\n",
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" pygit2 conda-forge/linux-64::pygit2-1.5.0-py39h3811e60_0\n",
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" pygtrie conda-forge/noarch::pygtrie-2.3.2-pyh8c360ce_0\n",
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" python-benedict conda-forge/noarch::python-benedict-0.24.0-pyhd8ed1ab_0\n",
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" python-fsutil conda-forge/noarch::python-fsutil-0.5.0-pyhd8ed1ab_0\n",
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" python-slugify conda-forge/noarch::python-slugify-5.0.2-pyhd8ed1ab_0\n",
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" rich conda-forge/linux-64::rich-10.2.2-py39hf3d152e_0\n",
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" ruamel.yaml conda-forge/linux-64::ruamel.yaml-0.17.4-py39h3811e60_0\n",
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" ruamel.yaml.clib conda-forge/linux-64::ruamel.yaml.clib-0.2.2-py39h3811e60_2\n",
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" shortuuid conda-forge/linux-64::shortuuid-1.0.1-py39hf3d152e_4\n",
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" shtab conda-forge/noarch::shtab-1.3.6-pyhd8ed1ab_0\n",
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" smmap conda-forge/noarch::smmap-3.0.5-pyh44b312d_0\n",
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" tabulate conda-forge/noarch::tabulate-0.8.9-pyhd8ed1ab_0\n",
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" text-unidecode conda-forge/noarch::text-unidecode-1.3-py_0\n",
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" toml conda-forge/noarch::toml-0.10.2-pyhd8ed1ab_0\n",
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" typing_extensions conda-forge/noarch::typing_extensions-3.7.4.3-py_0\n",
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" unidecode conda-forge/noarch::unidecode-1.2.0-pyhd8ed1ab_0\n",
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" voluptuous conda-forge/noarch::voluptuous-0.12.1-pyhd3deb0d_0\n",
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" wheel conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0\n",
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" zc.lockfile conda-forge/noarch::zc.lockfile-2.0-py_0\n",
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"\n",
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"\n",
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" certifi pkgs/main::certifi-2020.12.5-py39h06a~ --> conda-forge::certifi-2020.12.5-py39hf3d152e_1\n",
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" libgcc-ng pkgs/main::libgcc-ng-9.1.0-hdf63c60_0 --> conda-forge::libgcc-ng-9.3.0-h2828fa1_19\n",
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"\n",
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" _libgcc_mutex pkgs/main::_libgcc_mutex-0.1-main --> conda-forge::_libgcc_mutex-0.1-conda_forge\n",
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" ca-certificates pkgs/main::ca-certificates-2021.4.13-~ --> conda-forge::ca-certificates-2020.12.5-ha878542_0\n",
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" conda pkgs/main::conda-4.10.1-py39h06a4308_1 --> conda-forge::conda-4.10.1-py39hf3d152e_0\n",
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" openssl pkgs/main::openssl-1.1.1k-h27cfd23_0 --> conda-forge::openssl-1.1.1k-h7f98852_0\n",
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"diskcache-5.2.1 | 36 KB | ##################################### | 100% \n",
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"pathspec-0.8.1 | 29 KB | ##################################### | 100% \n",
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" Downloading https://files.pythonhosted.org/packages/62/1e/a94a8d635fa3ce4cfc7f506003548d0a2447ae76fd5ca53932970fe3053f/pyasn1-0.4.8-py2.py3-none-any.whl (77kB)\n",
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"commonmark-0.9.1 | 46 KB | ##################################### | 100% \n",
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"configobj-5.0.6 | 31 KB | ##################################### | 100% \n",
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" Downloading https://files.pythonhosted.org/packages/29/29/a465741a3d97ea3c17d21eaad4c64205428bde56742360876c4391f930d4/pathspec-0.8.1-py2.py3-none-any.whl\n",
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"python-fsutil-0.5.0 | 13 KB | ##################################### | 100% \n",
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"fsspec-0.9.0 | 75 KB | ##################################### | 100% \n",
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" Downloading https://files.pythonhosted.org/packages/83/96/55b82d9f13763be9d672622e1b8106c85acb83edd7cc2fa5bc67cd9877e9/contextvars-2.4.tar.gz\n",
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"dulwich-0.20.23 | 721 KB | ##################################### | 100% \n",
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"bzip2-1.0.8 | 484 KB | ##################################### | 100% \n",
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" Downloading https://files.pythonhosted.org/packages/e1/54/d08d1ad53788515392bec14d2d6e8c410bffdc127780a9a4aa8e6854d502/distro-1.7.0-py3-none-any.whl\n",
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"ply-3.11 | 44 KB | ##################################### | 100% \n",
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"libgit2-1.1.0 | 693 KB | ##################################### | 100% \n",
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" Using cached https://files.pythonhosted.org/packages/05/8e/8de486cbd03baba4deef4142bd643a3e7bbe954a784dc1bb17142572d127/packaging-21.3-py3-none-any.whl\n",
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"ftfy-5.5.1 | 47 KB | ##################################### | 100% \n",
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"nanotime-0.5.2 | 6 KB | ##################################### | 100% \n",
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" Using cached https://files.pythonhosted.org/packages/45/6b/44f7f8f1e110027cf88956b59f2fad776cca7e1704396d043f89effd3a0e/typing_extensions-4.1.1-py3-none-any.whl\n",
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"pyasn1-0.4.8 | 53 KB | ##################################### | 100% \n",
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"unidecode-1.2.0 | 155 KB | ##################################### | 100% \n",
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" Using cached https://files.pythonhosted.org/packages/a0/a1/b153a0a4caf7a7e3f15c2cd56c7702e2cf3d89b1b359d1f1c5e59d68f4ce/importlib_metadata-4.8.3-py3-none-any.whl\n",
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"dvc-2.1.0 | 551 KB | ##################################### | 100% \n",
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"Collecting diskcache>=5.2.1 (from dvc)\n",
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"pydot-1.2.4 | 20 KB | ##################################### | 100% \n",
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" Downloading https://files.pythonhosted.org/packages/a1/c4/80d38cf6852ba87f8b506a91f18b3a485c668f452700689add960d7e2ecc/diskcache-5.4.0-py3-none-any.whl (44kB)\n",
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"zc.lockfile-2.0 | 11 KB | ##################################### | 100% \n",
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"dpath-2.0.1 | 23 KB | ##################################### | 100% \n",
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"Collecting text-unidecode>=1.3 (from python-slugify<7.0.0,>=6.0.1->python-benedict>=0.24.2->dvc)\n",
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||||||
|
" Downloading https://files.pythonhosted.org/packages/a6/a5/c0b6468d3824fe3fde30dbb5e1f687b291608f9473681bbf7dabbf5a87d7/text_unidecode-1.3-py2.py3-none-any.whl (78kB)\n",
|
||||||
|
"\u001b[K 100% |████████████████████████████████| 81kB 2.2MB/s ta 0:00:01\n",
|
||||||
|
"\u001b[?25hCollecting wcwidth (from ftfy<7.0.0,>=6.0.0->python-benedict>=0.24.2->dvc)\n",
|
||||||
|
" Using cached https://files.pythonhosted.org/packages/59/7c/e39aca596badaf1b78e8f547c807b04dae603a433d3e7a7e04d67f2ef3e5/wcwidth-0.2.5-py2.py3-none-any.whl\n",
|
||||||
|
"Collecting pycparser (from cffi>=1.4.0->pygit2<1.7,>=1.5.0; python_version < \"3.7\"->dvc)\n",
|
||||||
|
" Using cached https://files.pythonhosted.org/packages/62/d5/5f610ebe421e85889f2e55e33b7f9a6795bd982198517d912eb1c76e1a53/pycparser-2.21-py2.py3-none-any.whl\n",
|
||||||
|
"Building wheels for collected packages: nanotime, flufl.lock, psutil, configobj, pygtrie, dulwich, pygit2, contextvars, atpublic, mailchecker, ftfy, future, idna-ssl\n",
|
||||||
|
" Running setup.py bdist_wheel for nanotime ... \u001b[?25ldone\n",
|
||||||
|
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/41/99/17/7135f635215e1f61e906295afd11f4f791cfe4ab45f3bfdca2\n",
|
||||||
|
" Running setup.py bdist_wheel for flufl.lock ... \u001b[?25ldone\n",
|
||||||
|
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/4f/51/d7/f65a7b7f37da7594f7021b122fe677187667ad21f1171d2514\n",
|
||||||
|
" Running setup.py bdist_wheel for psutil ... \u001b[?25ldone\n",
|
||||||
|
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/6e/94/8f/ef906811f8dcf6824a9747df0381615be48d723073fb59a317\n",
|
||||||
|
" Running setup.py bdist_wheel for configobj ... \u001b[?25ldone\n",
|
||||||
|
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/f1/e4/16/4981ca97c2d65106b49861e0b35e2660695be7219a2d351ee0\n",
|
||||||
|
" Running setup.py bdist_wheel for pygtrie ... \u001b[?25ldone\n",
|
||||||
|
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/db/57/91/73782136379fe419036c5ec0e4070d8b3a35f2a36bd6a94ed8\n",
|
||||||
|
" Running setup.py bdist_wheel for dulwich ... \u001b[?25ldone\n",
|
||||||
|
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/63/28/8c/0bbff7d6e30f3fc523639b000b33aba9155152e9eb23689ba0\n",
|
||||||
|
" Running setup.py bdist_wheel for pygit2 ... \u001b[?25lerror\n",
|
||||||
|
" Complete output from command /usr/bin/python3 -u -c \"import setuptools, tokenize;__file__='/tmp/pip-build-hr8mtrcf/pygit2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" bdist_wheel -d /tmp/tmp4kyicel3pip-wheel- --python-tag cp36:\n",
|
||||||
|
" running bdist_wheel\n",
|
||||||
|
" running build\n",
|
||||||
|
" running build_py\n",
|
||||||
|
" creating build\n",
|
||||||
|
" creating build/lib.linux-x86_64-3.6\n",
|
||||||
|
" creating build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/__init__.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/_build.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/_run.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/blame.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/callbacks.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/config.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/credentials.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/errors.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/ffi.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/index.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/packbuilder.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/refspec.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/remote.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/repository.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/settings.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/submodule.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/utils.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" creating build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/attr.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/blame.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/buffer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/callbacks.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/checkout.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/clone.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/common.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/config.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/describe.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/diff.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/errors.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/graph.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/index.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/indexer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/merge.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/net.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/oid.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/pack.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/proxy.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/refspec.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/remote.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/repository.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/revert.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/stash.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/strarray.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/submodule.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/transport.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/types.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" running build_ext\n",
|
||||||
|
" generating cffi module 'build/temp.linux-x86_64-3.6/pygit2._libgit2.c'\n",
|
||||||
|
" creating build/temp.linux-x86_64-3.6\n",
|
||||||
|
" building 'pygit2._pygit2' extension\n",
|
||||||
|
" creating build/temp.linux-x86_64-3.6/src\n",
|
||||||
|
" x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/usr/include/python3.6m -c src/blob.c -o build/temp.linux-x86_64-3.6/src/blob.o\n",
|
||||||
|
" In file included from src/blob.c:30:0:\n",
|
||||||
|
" src/blob.h:33:10: fatal error: git2.h: No such file or directory\n",
|
||||||
|
" #include <git2.h>\n",
|
||||||
|
" ^~~~~~~~\n",
|
||||||
|
" compilation terminated.\n",
|
||||||
|
" error: command 'x86_64-linux-gnu-gcc' failed with exit status 1\n",
|
||||||
|
" \n",
|
||||||
|
" ----------------------------------------\n",
|
||||||
|
"\u001b[31m Failed building wheel for pygit2\u001b[0m\n",
|
||||||
|
"\u001b[?25h Running setup.py clean for pygit2\n"
|
||||||
|
]
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"name": "stdout",
|
||||||
|
"output_type": "stream",
|
||||||
|
"text": [
|
||||||
|
" Running setup.py bdist_wheel for contextvars ... \u001b[?25ldone\n",
|
||||||
|
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/a5/7d/68/1ebae2668bda2228686e3c1cf16f2c2384cea6e9334ad5f6de\n",
|
||||||
|
" Running setup.py bdist_wheel for atpublic ... \u001b[?25ldone\n",
|
||||||
|
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/33/25/82/57d46b60a048f8e30b31f10497539498a3b826c78e2433c2d4\n",
|
||||||
|
" Running setup.py bdist_wheel for mailchecker ... \u001b[?25ldone\n",
|
||||||
|
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/fd/e1/e7/804e77a70eac7103bdba2f4b3e1eba36840b38554a4b8152c8\n",
|
||||||
|
" Running setup.py bdist_wheel for ftfy ... \u001b[?25ldone\n",
|
||||||
|
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/99/2c/e6/109c8a28fef7a443f67ba58df21fe1d0067ac3322e75e6b0b7\n",
|
||||||
|
" Running setup.py bdist_wheel for future ... \u001b[?25ldone\n",
|
||||||
|
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/8b/99/a0/81daf51dcd359a9377b110a8a886b3895921802d2fc1b2397e\n",
|
||||||
|
" Running setup.py bdist_wheel for idna-ssl ... \u001b[?25ldone\n",
|
||||||
|
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/d3/00/b3/32d613e19e08a739751dd6bf998cfed277728f8b2127ad4eb7\n",
|
||||||
|
"Successfully built nanotime flufl.lock psutil configobj pygtrie dulwich contextvars atpublic mailchecker ftfy future idna-ssl\n",
|
||||||
|
"Failed to build pygit2\n",
|
||||||
|
"Installing collected packages: setuptools, colorama, dictdiffer, ply, nanotime, asynctest, idna, multidict, typing-extensions, yarl, idna-ssl, frozenlist, async-timeout, aiosignal, charset-normalizer, attrs, aiohttp, certifi, urllib3, requests, fsspec, decorator, networkx, atpublic, flufl.lock, shtab, shortuuid, smmap, gitdb, gitpython, zipp, importlib-resources, tqdm, zc.lockfile, dataclasses, commonmark, pygments, rich, aiohttp-retry, voluptuous, psutil, six, importlib-metadata, flatten-dict, configobj, pygtrie, tabulate, dulwich, appdirs, ruamel.yaml.clib, ruamel.yaml, text-unidecode, python-slugify, python-fsutil, mailchecker, pyyaml, toml, xmltodict, phonenumbers, wcwidth, ftfy, python-dateutil, python-benedict, future, pyparsing, grandalf, dpath, pycparser, cffi, cached-property, pygit2, pyasn1, pathspec, immutables, contextvars, distro, packaging, diskcache, pydot, funcy, dvc\n",
|
||||||
|
" Running setup.py install for pygit2 ... \u001b[?25lerror\n",
|
||||||
|
" Complete output from command /usr/bin/python3 -u -c \"import setuptools, tokenize;__file__='/tmp/pip-build-hr8mtrcf/pygit2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" install --record /tmp/pip-6tml5js1-record/install-record.txt --single-version-externally-managed --compile --user --prefix=:\n",
|
||||||
|
" running install\n",
|
||||||
|
" /home/tomek/.local/lib/python3.6/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.\n",
|
||||||
|
" setuptools.SetuptoolsDeprecationWarning,\n",
|
||||||
|
" running build\n",
|
||||||
|
" running build_py\n",
|
||||||
|
" creating build\n",
|
||||||
|
" creating build/lib.linux-x86_64-3.6\n",
|
||||||
|
" creating build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/__init__.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/_build.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/_run.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/blame.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/callbacks.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/config.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/credentials.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/errors.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/ffi.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/index.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/packbuilder.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/refspec.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/remote.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/repository.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/settings.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/submodule.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" copying pygit2/utils.py -> build/lib.linux-x86_64-3.6/pygit2\n",
|
||||||
|
" creating build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/attr.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/blame.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/buffer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/callbacks.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/checkout.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/clone.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/common.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/config.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/describe.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/diff.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/errors.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/graph.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/index.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/indexer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/merge.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/net.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/oid.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/pack.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/proxy.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/refspec.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/remote.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/repository.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/revert.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/stash.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/strarray.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/submodule.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/transport.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" copying pygit2/decl/types.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
|
||||||
|
" running build_ext\n",
|
||||||
|
" generating cffi module 'build/temp.linux-x86_64-3.6/pygit2._libgit2.c'\n",
|
||||||
|
" creating build/temp.linux-x86_64-3.6\n",
|
||||||
|
" building 'pygit2._pygit2' extension\n",
|
||||||
|
" creating build/temp.linux-x86_64-3.6/src\n",
|
||||||
|
" x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/usr/include/python3.6m -c src/blob.c -o build/temp.linux-x86_64-3.6/src/blob.o\n",
|
||||||
|
" In file included from src/blob.c:30:0:\n",
|
||||||
|
" src/blob.h:33:10: fatal error: git2.h: No such file or directory\n",
|
||||||
|
" #include <git2.h>\n",
|
||||||
|
" ^~~~~~~~\n",
|
||||||
|
" compilation terminated.\n",
|
||||||
|
" error: command 'x86_64-linux-gnu-gcc' failed with exit status 1\n",
|
||||||
|
" \n",
|
||||||
|
" ----------------------------------------\n",
|
||||||
|
"\u001b[31mCommand \"/usr/bin/python3 -u -c \"import setuptools, tokenize;__file__='/tmp/pip-build-hr8mtrcf/pygit2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" install --record /tmp/pip-6tml5js1-record/install-record.txt --single-version-externally-managed --compile --user --prefix=\" failed with error code 1 in /tmp/pip-build-hr8mtrcf/pygit2/\u001b[0m\n",
|
||||||
|
"\u001b[?25h"
|
||||||
]
|
]
|
||||||
}
|
}
|
||||||
],
|
],
|
||||||
"source": [
|
"source": [
|
||||||
"conda install dvc"
|
"!pip3 install dvc"
|
||||||
]
|
]
|
||||||
},
|
},
|
||||||
{
|
{
|
||||||
@ -525,10 +737,11 @@
|
|||||||
" - dużymi plikami, takimi jak plikami z danymi wejściowymi czy plikami modeli, trudno zarządza się za pomocą gita, ze względu na problemy z:\n",
|
" - dużymi plikami, takimi jak plikami z danymi wejściowymi czy plikami modeli, trudno zarządza się za pomocą gita, ze względu na problemy z:\n",
|
||||||
" - wydajnością\n",
|
" - wydajnością\n",
|
||||||
" - przestrzenią w repozytorium\n",
|
" - przestrzenią w repozytorium\n",
|
||||||
|
" - ograniczenia ze strony serwisu (np. [limit 100 MB na plik w Github](https://docs.github.com/en/repositories/working-with-files/managing-large-files/about-large-files-on-github))\n",
|
||||||
" - Git posiada rozszerzenie [lfs(Large File Storage)](https://git-lfs.github.com/), które stanowi pewne rozwiązanie tego problemu. Same pliki przechowywane są na specjalnym zdalnym serwerze, w repozytorium przechowywane są jedynie odnośniki do tych plików i pewne metadane\n",
|
" - Git posiada rozszerzenie [lfs(Large File Storage)](https://git-lfs.github.com/), które stanowi pewne rozwiązanie tego problemu. Same pliki przechowywane są na specjalnym zdalnym serwerze, w repozytorium przechowywane są jedynie odnośniki do tych plików i pewne metadane\n",
|
||||||
" - DVC proponuje podobne podejście, ale:\n",
|
" - DVC proponuje podobne podejście, ale:\n",
|
||||||
" - pliki mogą być przechowywane na niemal dowolnym serwerze, również lokalnie\n",
|
" - pliki mogą być przechowywane na niemal dowolnym serwerze, również lokalnie\n",
|
||||||
" - brak limitu wielkości plików (w Git-LFS najczęściej limit 2GB)\n",
|
" - brak limitu wielkości plików (w Git-LFS na Github [limit 2GB](https://docs.github.com/en/repositories/working-with-files/managing-large-files/about-git-large-file-storage))\n",
|
||||||
" - DVC zapewnia dodatkowe narzędzie umożliwiające śledzenie plików i ich powiązań z wynikami eksperymentów\n",
|
" - DVC zapewnia dodatkowe narzędzie umożliwiające śledzenie plików i ich powiązań z wynikami eksperymentów\n",
|
||||||
" - więcej, patrz [tutaj](https://dvc.org/doc/user-guide/related-technologies)"
|
" - więcej, patrz [tutaj](https://dvc.org/doc/user-guide/related-technologies)"
|
||||||
]
|
]
|
||||||
@ -776,6 +989,28 @@
|
|||||||
"!ls -l .dvc/cache/71"
|
"!ls -l .dvc/cache/71"
|
||||||
]
|
]
|
||||||
},
|
},
|
||||||
|
{
|
||||||
|
"cell_type": "code",
|
||||||
|
"execution_count": 1,
|
||||||
|
"id": "9666e0ae",
|
||||||
|
"metadata": {
|
||||||
|
"slideshow": {
|
||||||
|
"slide_type": "slide"
|
||||||
|
}
|
||||||
|
},
|
||||||
|
"outputs": [
|
||||||
|
{
|
||||||
|
"name": "stdout",
|
||||||
|
"output_type": "stream",
|
||||||
|
"text": [
|
||||||
|
"ls: cannot access './data': No such file or directory\r\n"
|
||||||
|
]
|
||||||
|
}
|
||||||
|
],
|
||||||
|
"source": [
|
||||||
|
"!ls -l ./data"
|
||||||
|
]
|
||||||
|
},
|
||||||
{
|
{
|
||||||
"cell_type": "markdown",
|
"cell_type": "markdown",
|
||||||
"id": "901e8e90",
|
"id": "901e8e90",
|
||||||
@ -792,6 +1027,26 @@
|
|||||||
" - w realnych zastosowaniach podalibyśmy tutaj ścieżkę do jakiegoś zasobu dostępnego przez inernet jak np. serwer SFTP, ścieżka do AWS S3 itp."
|
" - w realnych zastosowaniach podalibyśmy tutaj ścieżkę do jakiegoś zasobu dostępnego przez inernet jak np. serwer SFTP, ścieżka do AWS S3 itp."
|
||||||
]
|
]
|
||||||
},
|
},
|
||||||
|
{
|
||||||
|
"cell_type": "markdown",
|
||||||
|
"id": "5e47dbd3",
|
||||||
|
"metadata": {},
|
||||||
|
"source": [
|
||||||
|
"Obsługiwane typy zdalnych lokalizacji (remotes): https://dvc.org/doc/command-reference/remote/add#supported-storage-types\n",
|
||||||
|
" - Amazon S3\n",
|
||||||
|
" - S3-compatible storage\n",
|
||||||
|
" - Microsoft Azure Blob Storage\n",
|
||||||
|
" - Google Drive\n",
|
||||||
|
" - Google Cloud Storage\n",
|
||||||
|
" - Aliyun OSS\n",
|
||||||
|
" - SSH\n",
|
||||||
|
" - HDFS\n",
|
||||||
|
" - WebHDFS\n",
|
||||||
|
" - HTTP\n",
|
||||||
|
" - WebDAV\n",
|
||||||
|
" - local remote"
|
||||||
|
]
|
||||||
|
},
|
||||||
{
|
{
|
||||||
"cell_type": "code",
|
"cell_type": "code",
|
||||||
"execution_count": 28,
|
"execution_count": 28,
|
||||||
@ -944,7 +1199,7 @@
|
|||||||
}
|
}
|
||||||
},
|
},
|
||||||
"source": [
|
"source": [
|
||||||
"Dodawanie nowych plików i modyfikacja istniejących wygląda tak podobnie jak przy zwykłych plikach śledzonych przez git, tylko zamiast `git` używamy polecenia `dvc` a dodatkowo pamiętamy o zarządzaniu plikami `*.dvc` za pomocą gita:"
|
"Dodawanie nowych plików i modyfikacja istniejących wygląda podobnie jak przy zwykłych plikach śledzonych przez git, tylko zamiast `git` używamy polecenia `dvc` a dodatkowo pamiętamy o zarządzaniu plikami `*.dvc` za pomocą gita:"
|
||||||
]
|
]
|
||||||
},
|
},
|
||||||
{
|
{
|
||||||
@ -1356,10 +1611,10 @@
|
|||||||
"## Zadania [15pkt]\n",
|
"## Zadania [15pkt]\n",
|
||||||
"1. Zainicjalizuj repozytorium DVC wewnątrz Twojego repozytorium z projektem [1pkt]\n",
|
"1. Zainicjalizuj repozytorium DVC wewnątrz Twojego repozytorium z projektem [1pkt]\n",
|
||||||
"2. Dodaj plik(i) z danymi w Twoim projekcie do DVC [1pkt]\n",
|
"2. Dodaj plik(i) z danymi w Twoim projekcie do DVC [1pkt]\n",
|
||||||
"3. Skonfiguruj remote (dane do konfiguracji będą podane niebawem) [1pkt]\n",
|
"3. Skonfiguruj remote (dane do konfiguracji podane poniżej) [3pkt]\n",
|
||||||
"4. Stwórz/zdefiniuj i dodaj do repozytorium plik `dvc.yaml` opisujący kroki wykonywane w Twoim projekcie. Wydziel przynajmniej 2 kroki (np. przygotowanie danych/trenowanie) powiązane ze sobą za pomocą zależności (skorzystaj z \n",
|
"4. Stwórz/zdefiniuj i dodaj do repozytorium plik `dvc.yaml` opisujący kroki wykonywane w Twoim projekcie. Wydziel przynajmniej 2 kroki (np. przygotowanie danych/trenowanie) powiązane ze sobą za pomocą zależności (skorzystaj z \n",
|
||||||
"materiałów \"Getting started\", link powyżej) [6pkt]\n",
|
"materiałów \"Getting started\", link powyżej) [6pkt]\n",
|
||||||
"5. Stwórz projekt na Jenkinsie (`s1233456-dvc`), w którym sklonujesz repozytorium, ściągniesz pliki dvc (za pomocą `dvc pull`) i uruchomisz pipeline (za pomocą `dvc reproduce`) [6pkt]"
|
"5. Stwórz projekt na Jenkinsie (`s1233456-dvc`), w którym sklonujesz repozytorium, ściągniesz pliki dvc (za pomocą `dvc pull`) i uruchomisz pipeline (za pomocą `dvc reproduce`) [4pkt]"
|
||||||
]
|
]
|
||||||
},
|
},
|
||||||
{
|
{
|
||||||
@ -1525,7 +1780,7 @@
|
|||||||
},
|
},
|
||||||
{
|
{
|
||||||
"cell_type": "code",
|
"cell_type": "code",
|
||||||
"execution_count": 32,
|
"execution_count": 9,
|
||||||
"id": "5b2fa175",
|
"id": "5b2fa175",
|
||||||
"metadata": {
|
"metadata": {
|
||||||
"slideshow": {
|
"slideshow": {
|
||||||
@ -1537,12 +1792,12 @@
|
|||||||
"name": "stdout",
|
"name": "stdout",
|
||||||
"output_type": "stream",
|
"output_type": "stream",
|
||||||
"text": [
|
"text": [
|
||||||
"\u001b[0m"
|
"/bin/bash: dvc: command not found\r\n"
|
||||||
]
|
]
|
||||||
}
|
}
|
||||||
],
|
],
|
||||||
"source": [
|
"source": [
|
||||||
"!dvc remote modify --local ium_ssh_remote password [hasło takie jak do serwera MLflow (patrz MSTeams)]"
|
"!dvc remote modify --local ium_ssh_remote password #[hasło takie jak do serwera MLflow ]"
|
||||||
]
|
]
|
||||||
},
|
},
|
||||||
{
|
{
|
||||||
@ -1637,7 +1892,7 @@
|
|||||||
"name": "python",
|
"name": "python",
|
||||||
"nbconvert_exporter": "python",
|
"nbconvert_exporter": "python",
|
||||||
"pygments_lexer": "ipython3",
|
"pygments_lexer": "ipython3",
|
||||||
"version": "3.9.1"
|
"version": "3.6.9"
|
||||||
},
|
},
|
||||||
"slideshow": {
|
"slideshow": {
|
||||||
"slide_type": "slide"
|
"slide_type": "slide"
|
||||||
|
|||||||
Loading…
Reference in New Issue
Block a user