RandomSec/OpenRefine/docs/versioned_docs/version-3.4/manual/transposing.md
2022-01-04 16:31:32 +01:00

11 KiB

id title sidebar_label
transposing Transposing Transposing

Overview

These functions were created to solve common problems with reshaping your data: pivoting cells from a row into a column, or pivoting cells from a column into a row. You can also transpose from a repeated set of values into multiple columns.

Transpose cells across columns into rows

Imagine personal data with addresses in this format:

Name Street City State/Province Country Postal code
Jacques Cousteau 23, quai de Conti Paris France 75270
Emmy Noether 010 N Merion Avenue Bryn Mawr Pennsylvania USA 19010

You can transpose the address information from this format into multiple rows. Go to the “Street” column and select TransposeTranspose cells across columns into rows. From there you can select all of the five columns, starting with “Street” and ending with “Postal code,” that correspond to address information. Once you begin, you should put your project into records mode to associate the subsequent rows with “Name” as the key column.

A screenshot of the transpose across columns window.

One column

You can transpose the multiple address columns into a series of rows:

Name Address
Jacques Cousteau 23, quai de Conti
Paris
France
75270
Emmy Noether 010 N Merion Avenue
Bryn Mawr
Pennsylvania
USA
19010

You can choose one column and include the column-name information in each cell by prepending it to the value, with or without a separator:

Name Address
Jacques Cousteau Street: 23, quai de Conti
City: Paris
Country: France
Postal code: 75270
Emmy Noether Street: 010 N Merion Avenue
City: Bryn Mawr
State/Province: Pennsylvania
Country: USA
Postal code: 19010

Two columns

You can retain the column names as separate cell values, by selecting Two new columns and naming the key and value columns.

Name Address part Address
Jacques Cousteau Street 23, quai de Conti
City Paris
Country France
Postal code 75270
Emmy Noether Street 010 N Merion Avenue
City Bryn Mawr
State/Province Pennsylvania
Country USA
Postal code 19010

Transpose cells in rows into columns

Imagine employee data in this format:

Column
Employee: Karen Chiu
Job title: Senior analyst
Office: New York
Employee: Joe Khoury
Job title: Junior analyst
Office: Beirut
Employee: Samantha Martinez
Job title: CTO
Office: Tokyo

The goal is to sort out all of the information contained in one column into separate columns, but keep it organized by the person it represents:

Name Job title Office
Karen Chiu Senior analyst New York
Joe Khoury Junior analyst Beirut
Samantha Martinez CTO Tokyo

By selecting TransposeTranspose cells in rows into columns... a window will appear that simply asks how many rows to transpose. In this case, each employee record has three rows, so input “3” (do not subtract one for the original column). The original column will disappear and be replaced with three columns, with the name of the original column plus a number appended.

Column 1 Column 2 Column 3
Employee: Karen Chiu Job title: Senior analyst Office: New York
Employee: Joe Khoury Job title: Junior analyst Office: Beirut
Employee: Samantha Martinez Job title: CTO Office: Tokyo

From here you can use Cell editingReplace to remove “Employee: ”, “Job title: ”, and “Office: ” if you wish, or use expressions with Edit cellsTransform... to clean out the extraneous characters:

value.replace("Employee: ", "")

If your dataset doesn't have a predictable number of cells per intended row, such that you cannot specify easily how many columns to create, try Columnize by key/value columns.

Columnize by key/value columns

This operation can be used to reshape a dataset that contains key and value columns: the repeating strings in the key column become new column names, and the contents of the value column are moved to new columns. This operation can be found at TransposeColumnize by key/value columns.

A screenshot of the Columnize window.

Consider the following example, with flowers, their colours, and their International Union for Conservation of Nature (IUCN) identifiers:

Field Data
Name Galanthus nivalis
Color White
IUCN ID 162168
Name Narcissus cyclamineus
Color Yellow
IUCN ID 161899

In this format, each flower species is described by multiple attributes on consecutive rows. The “Field” column contains the keys and the “Data” column contains the values. In the Columnize by key/value columns window you can select each of these from the available columns. It transforms the table as follows:

Name Color IUCN ID
Galanthus nivalis White 162168
Narcissus cyclamineus Yellow 161899

Entries with multiple values in the same column

If a new row would have multiple values for a given key, then these values will be grouped on consecutive rows, to form a record structure.

For instance, flowers can have multiple colors:

Field Data
Name Galanthus nivalis
Color White
Color Green
IUCN ID 162168
Name Narcissus cyclamineus
Color Yellow
IUCN ID 161899

This table is transformed by the Columnize operation to:

Name Color IUCN ID
Galanthus nivalis White 162168
Green
Narcissus cyclamineus Yellow 161899

The first key encountered by the operation serves as the record key, so the “Green” value is attached to the “Galanthus nivalis” name. See the Row order section for more details about the influence of row order on the results of the operation.

Notes column

In addition to the key and value columns, you can optionally add a column for notes. This can be used to store extra metadata associated to a key/value pair.

Consider the following example:

Field Data Source
Name Galanthus nivalis IUCN
Color White Contributed by Martha
IUCN ID 162168
Name Narcissus cyclamineus Legacy
Color Yellow 2009 survey
IUCN ID 161899

If the “Source” column is selected as the notes column, this table is transformed to:

Name Color IUCN ID Source: Name Source: Color
Galanthus nivalis White 162168 IUCN Contributed by Martha
Narcissus cyclamineus Yellow 161899 Legacy 2009 survey

Notes columns can therefore be used to preserve provenance or other context about a particular key/value pair.

Row order

The order in which the key/value pairs appear matters. The Columnize operation will use the first key it encounters as the delimiter for entries: every time it encounters this key again, it will produce a new row, and add the following key/value pairs to that row.

Consider for instance the following table:

Field Data
Name Galanthus nivalis
Color White
IUCN ID 162168
Name Crinum variabile
Name Narcissus cyclamineus
Color Yellow
IUCN ID 161899

The occurrences of the “Name” value in the “Field” column define the boundaries of the entries. Because there is no other row between the “Crinum variabile” and the “Narcissus cyclamineus” rows, the “Color” and “IUCN ID” columns for the “Crinum variabile” entry will be empty:

Name Color IUCN ID
Galanthus nivalis White 162168
Crinum variabile
Narcissus cyclamineus Yellow 161899

This sensitivity to order is removed if there are extra columns: in that case, the first extra column will serve as the key for the new rows.

Extra columns

If your dataset contains extra columns, that are not being used as the key, value, or notes columns, they can be preserved by the operation. For this to work, they must have the same value in all old rows corresponding to a new row.

In the following example, the “Field” and “Data” columns are used as key and value columns respectively, and the “Wikidata ID” column is not selected:

Field Data Wikidata ID
Name Galanthus nivalis Q109995
Color White Q109995
IUCN ID 162168 Q109995
Name Narcissus cyclamineus Q1727024
Color Yellow Q1727024
IUCN ID 161899 Q1727024

This will be transformed to:

Wikidata ID Name Color IUCN ID
Q109995 Galanthus nivalis White 162168
Q1727024 Narcissus cyclamineus Yellow 161899

This actually changes the operation: OpenRefine no longer looks for the first key (“Name”) but simply pivots all information based on the first extra column's values. Every old row with the same value gets transposed into one new row. If you have more than one extra column, they are pivoted as well but not used as the new key.

You can use Fill down to put identical values in the extra columns if you need to.