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aitech-eks-pub/cw/09_sequence_labeling_ODPOWIEDZI.ipynb
Jakub Pokrywka ad34aaeae0 add metadata to cw
2021-09-27 12:34:44 +02:00

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{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"![Logo 1](https://git.wmi.amu.edu.pl/AITech/Szablon/raw/branch/master/Logotyp_AITech1.jpg)\n",
"<div class=\"alert alert-block alert-info\">\n",
"<h1> Ekstrakcja informacji </h1>\n",
"<h2> 9. <i>Sequence labeling</i> [ćwiczenia]</h2> \n",
"<h3> Jakub Pokrywka (2021)</h3>\n",
"</div>\n",
"\n",
"![Logo 2](https://git.wmi.amu.edu.pl/AITech/Szablon/raw/branch/master/Logotyp_AITech2.jpg)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Klasyfikacja wieloklasowa i sequence labelling"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import numpy as np\n",
"import gensim\n",
"import torch\n",
"import pandas as pd\n",
"import seaborn as sns\n",
"from sklearn.model_selection import train_test_split\n",
"\n",
"from datasets import load_dataset\n",
"from torchtext.vocab import Vocab\n",
"from collections import Counter\n",
"\n",
"from sklearn.datasets import fetch_20newsgroups\n",
"# https://scikit-learn.org/0.19/datasets/twenty_newsgroups.html\n",
"\n",
"from sklearn.feature_extraction.text import TfidfVectorizer\n",
"from sklearn.metrics import accuracy_score"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Klasyfikacja"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Klasfikacja binarna- 2 klasy"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"CATEGORIES = ['soc.religion.christian', 'alt.atheism']"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"newsgroups = fetch_20newsgroups(categories=CATEGORIES)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"X = newsgroups['data']"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"Y = newsgroups['target']"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"Y_names = newsgroups['target_names']"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"scrolled": true
},
"outputs": [],
"source": [
"X[0:1]"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"Y"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"scrolled": true
},
"outputs": [],
"source": [
"Y_names"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"del CATEGORIES, newsgroups, X, Y, Y_names"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### klasyfikacja wieloklasowa"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"newsgroups_train_dev = fetch_20newsgroups(subset = 'train')\n",
"newsgroups_test = fetch_20newsgroups(subset = 'test')"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"newsgroups_train_dev_text = newsgroups_train_dev['data']\n",
"newsgroups_test_text = newsgroups_test['data']"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"Y_train_dev = newsgroups_train_dev['target']\n",
"Y_test = newsgroups_test['target']"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"newsgroups_train_text, newsgroups_dev_text, Y_train, Y_dev = train_test_split(newsgroups_train_dev_text, Y_train_dev, random_state=42)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"Y_names = newsgroups_train_dev['target_names']"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"Y_train_dev"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"Y_names"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"**Jaki baseline?**"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"scrolled": false
},
"outputs": [],
"source": [
"pd.value_counts(Y_train)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"accuracy_score(Y_test, np.ones_like(Y_test) * 10)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"\n",
"\n",
"**Pytanie** - w jaki sposób stworzyć taki klasyfikator na podstawie tylko wiedzy z poprzednich ćwiczeń?"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Zadanie - stworzyć klasyfikator regresji logistycznej one vs rest na podstawie tfdif. TFIDF powinien mieć słownik o wielkości 10000\n",
"\n",
"https://scikit-learn.org/stable/modules/generated/sklearn.multiclass.OneVsRestClassifier.html\n",
"https://scikit-learn.org/stable/modules/generated/sklearn.linear_model.LogisticRegression.html\n",
"https://scikit-learn.org/stable/modules/generated/sklearn.feature_extraction.text.TfidfVectorizer.html"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from sklearn.multiclass import OneVsRestClassifier\n",
"from sklearn.linear_model import LogisticRegression\n",
"from sklearn.feature_extraction.text import TfidfVectorizer"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"FEAUTERES = 10_000"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"vectorizer = TfidfVectorizer(max_features=FEAUTERES)\n",
"X_train = vectorizer.fit_transform(newsgroups_train_text)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"X_dev = vectorizer.transform(newsgroups_dev_text)\n",
"X_test = vectorizer.transform(newsgroups_test_text)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"clf = OneVsRestClassifier(LogisticRegression()).fit(X_train, Y_train)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"clf.predict(X_train[0:1])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"clf.predict_proba(X_train[0:1])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"np.max(clf.predict_proba(X_train[0]))"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"accuracy_score(clf.predict(X_train), Y_train)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"accuracy_score(clf.predict(X_dev), Y_dev)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"accuracy_score(clf.predict(X_test), Y_test)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Podejście softmax na tfidif"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"**Zadanie** Na podstawie poprzednich zajęć stworzyć sieć w pytorch bez warstw ukrytych, z jedną warstwą *output* z funkcją softmax (bez trenowania i ewaluacji sieci)\n",
"\n",
"Użyć https://pytorch.org/docs/stable/generated/torch.nn.Softmax.html?highlight=softmax"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"X_train"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"class NeuralNetworkModel(torch.nn.Module):\n",
"\n",
" def __init__(self,FEAUTERES, output_size):\n",
" super(NeuralNetworkModel, self).__init__()\n",
" self.fc1 = torch.nn.Linear(FEAUTERES,OUTPUT_SIZE)\n",
" self.softmax = torch.nn.Softmax(dim=0)\n",
" \n",
"\n",
" def forward(self, x):\n",
" x = self.fc1(x)\n",
" x = self.softmax(x)\n",
" return x"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"OUTPUT_SIZE = len(Y_names)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"nn_model = NeuralNetworkModel(FEAUTERES, OUTPUT_SIZE)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"nn_model(torch.Tensor(X_train[0:3].astype(np.float32).todense()))"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"BATCH_SIZE = 5"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"criterion = torch.nn.NLLLoss()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"optimizer = torch.optim.SGD(nn_model.parameters(), lr = 0.2)\n",
"#optimizer = torch.optim.Adam(nn_model.parameters())"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"def get_loss_acc(model, X_dataset, Y_dataset):\n",
" loss_score = 0\n",
" acc_score = 0\n",
" items_total = 0\n",
" model.eval()\n",
" for i in range(0, Y_dataset.shape[0], BATCH_SIZE):\n",
" X = X_dataset[i:i+BATCH_SIZE]\n",
" X = torch.tensor(X.astype(np.float32).todense())\n",
" Y = Y_dataset[i:i+BATCH_SIZE]\n",
" Y = torch.tensor(Y)\n",
" Y_predictions = model(X)\n",
" acc_score += torch.sum(torch.argmax(Y_predictions,dim=1) == Y).item()\n",
" items_total += Y.shape[0] \n",
"\n",
" loss = criterion(Y_predictions, Y)\n",
"\n",
" loss_score += loss.item() * Y.shape[0] \n",
" return (loss_score / items_total), (acc_score / items_total)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"scrolled": true
},
"outputs": [],
"source": [
"for epoch in range(5):\n",
" loss_score = 0\n",
" acc_score = 0\n",
" items_total = 0\n",
" nn_model.train()\n",
" for i in range(0, Y_train.shape[0], BATCH_SIZE):\n",
" X = X_train[i:i+BATCH_SIZE]\n",
" X = torch.tensor(X.astype(np.float32).todense())\n",
" Y = Y_train[i:i+BATCH_SIZE]\n",
"\n",
" Y = torch.tensor(Y)\n",
" Y_predictions = nn_model(X)\n",
" acc_score += torch.sum(torch.argmax(Y_predictions,dim=1) == Y).item()\n",
" items_total += Y.shape[0] \n",
"\n",
" optimizer.zero_grad()\n",
" loss = criterion(Y_predictions, Y)\n",
" loss.backward()\n",
" optimizer.step()\n",
"\n",
"\n",
" loss_score += loss.item() * Y.shape[0]\n",
"\n",
" \n",
" display(epoch)\n",
" display(get_loss_acc(nn_model, X_train, Y_train))\n",
" display(get_loss_acc(nn_model, X_dev, Y_dev))"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"X.shape"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"newsgroups_train_text"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Podejście softmax z embeddingami na przykładzie NER"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"scrolled": true
},
"outputs": [],
"source": [
"# !pip install torchtext\n",
"# !pip install datasets"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"https://www.aclweb.org/anthology/W03-0419.pdf"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"scrolled": false
},
"outputs": [],
"source": [
"dataset = load_dataset(\"conll2003\")"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"def build_vocab(dataset):\n",
" counter = Counter()\n",
" for document in dataset:\n",
" counter.update(document)\n",
" return Vocab(counter, specials=['<unk>', '<pad>', '<bos>', '<eos>'])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"vocab = build_vocab(dataset['train']['tokens'])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"dataset['train']['tokens']"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"len(vocab.itos)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"vocab['on']"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"def data_process(dt):\n",
" return [ torch.tensor([vocab['<bos>']] +[vocab[token] for token in document ] + [vocab['<eos>']], dtype = torch.long) for document in dt]\n"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"def labels_process(dt):\n",
" return [ torch.tensor([0] + document + [0], dtype = torch.long) for document in dt]\n"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"train_tokens_ids = data_process(dataset['train']['tokens'])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"test_tokens_ids = data_process(dataset['test']['tokens'])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"scrolled": true
},
"outputs": [],
"source": [
"train_labels = labels_process(dataset['train']['ner_tags'])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"test_labels = labels_process(dataset['test']['ner_tags'])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"train_tokens_ids[0]"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"max([max(x) for x in dataset['train']['ner_tags'] ])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"class NERModel(torch.nn.Module):\n",
"\n",
" def __init__(self,):\n",
" super(NERModel, self).__init__()\n",
" self.emb = torch.nn.Embedding(23627,200)\n",
" self.fc1 = torch.nn.Linear(600,9)\n",
" #self.softmax = torch.nn.Softmax(dim=0)\n",
" # nie trzeba, bo używamy https://pytorch.org/docs/stable/generated/torch.nn.CrossEntropyLoss.html\n",
" # jako kryterium\n",
" \n",
"\n",
" def forward(self, x):\n",
" x = self.emb(x)\n",
" x = x.reshape(600) \n",
" x = self.fc1(x)\n",
" #x = self.softmax(x)\n",
" return x"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"train_tokens_ids[0][1:4]"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"ner_model = NERModel()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"ner_model(train_tokens_ids[0][1:4])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"criterion = torch.nn.CrossEntropyLoss()"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"optimizer = torch.optim.Adam(ner_model.parameters())"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"len(train_labels)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"for epoch in range(2):\n",
" loss_score = 0\n",
" acc_score = 0\n",
" prec_score = 0\n",
" selected_items = 0\n",
" recall_score = 0\n",
" relevant_items = 0\n",
" items_total = 0\n",
" nn_model.train()\n",
" #for i in range(len(train_labels)):\n",
" for i in range(100):\n",
" for j in range(1, len(train_labels[i]) - 1):\n",
" \n",
" X = train_tokens_ids[i][j-1: j+2]\n",
" Y = train_labels[i][j: j+1]\n",
"\n",
" Y_predictions = ner_model(X)\n",
" \n",
" \n",
" acc_score += int(torch.argmax(Y_predictions) == Y)\n",
" \n",
" if torch.argmax(Y_predictions) != 0:\n",
" selected_items +=1\n",
" if torch.argmax(Y_predictions) != 0 and torch.argmax(Y_predictions) == Y.item():\n",
" prec_score += 1\n",
" \n",
" if Y.item() != 0:\n",
" relevant_items +=1\n",
" if Y.item() != 0 and torch.argmax(Y_predictions) == Y.item():\n",
" recall_score += 1\n",
" \n",
" items_total += 1\n",
"\n",
" \n",
" optimizer.zero_grad()\n",
" loss = criterion(Y_predictions.unsqueeze(0), Y)\n",
" loss.backward()\n",
" optimizer.step()\n",
"\n",
"\n",
" loss_score += loss.item() \n",
" \n",
" precision = prec_score / selected_items\n",
" recall = recall_score / relevant_items\n",
" f1_score = (2*precision * recall) / (precision + recall)\n",
" display('epoch: ', epoch)\n",
" display('loss: ', loss_score / items_total)\n",
" display('acc: ', acc_score / items_total)\n",
" display('prec: ', precision)\n",
" display('recall: : ', recall)\n",
" display('f1: ', f1_score)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"scrolled": true
},
"outputs": [],
"source": [
"loss_score = 0\n",
"acc_score = 0\n",
"prec_score = 0\n",
"selected_items = 0\n",
"recall_score = 0\n",
"relevant_items = 0\n",
"items_total = 0\n",
"nn_model.eval()\n",
"for i in range(100):\n",
"#for i in range(len(test_labels)):\n",
" for j in range(1, len(test_labels[i]) - 1):\n",
"\n",
" X = test_tokens_ids[i][j-1: j+2]\n",
" Y = test_labels[i][j: j+1]\n",
"\n",
" Y_predictions = ner_model(X)\n",
"\n",
"\n",
" acc_score += int(torch.argmax(Y_predictions) == Y)\n",
"\n",
" if torch.argmax(Y_predictions) != 0:\n",
" selected_items +=1\n",
" if torch.argmax(Y_predictions) != 0 and torch.argmax(Y_predictions) == Y.item():\n",
" prec_score += 1\n",
"\n",
" if Y.item() != 0:\n",
" relevant_items +=1\n",
" if Y.item() != 0 and torch.argmax(Y_predictions) == Y.item():\n",
" recall_score += 1\n",
"\n",
" items_total += 1\n",
"\n",
"\n",
" loss = criterion(Y_predictions.unsqueeze(0), Y)\n",
"\n",
"\n",
"\n",
" loss_score += loss.item() \n",
"\n",
"precision = prec_score / selected_items\n",
"recall = recall_score / relevant_items\n",
"f1_score = (2*precision * recall) / (precision + recall)\n",
"display('loss: ', loss_score / items_total)\n",
"display('acc: ', acc_score / items_total)\n",
"display('prec: ', precision)\n",
"display('recall: : ', recall)\n",
"display('f1: ', f1_score)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Zadanie domowe\n",
"\n",
"- sklonować repozytorium https://git.wmi.amu.edu.pl/kubapok/en-ner-conll-2003\n",
"- stworzyć klasyfikator bazujący na sieci neuronowej feed forward w pytorchu (można bazować na tym jupyterze lub nie).\n",
"- klasyfikator powinien obejmować dodatkowe cechy (np. długość wyrazu, czy wyraz zaczyna się od wielkiej litery, stemmming słowa, czy zawiera cyfrę)\n",
"- stworzyć predykcje w plikach dev-0/out.tsv oraz test-A/out.tsv\n",
"- wynik fscore sprawdzony za pomocą narzędzia geval (patrz poprzednie zadanie) powinien wynosić conajmniej 0.60\n",
"- proszę umieścić predykcję oraz skrypty generujące (w postaci tekstowej a nie jupyter) w repo, a w MS TEAMS umieścić link do swojego repo\n",
"termin 08.06, 80 punktów\n"
]
}
],
"metadata": {
"author": "Jakub Pokrywka",
"email": "kubapok@wmi.amu.edu.pl",
"kernelspec": {
"display_name": "Python 3",
"language": "python",
"name": "python3"
},
"lang": "pl",
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.3"
},
"subtitle": "9.Sequence labeling[ćwiczenia]",
"title": "Ekstrakcja informacji",
"year": "2021"
},
"nbformat": 4,
"nbformat_minor": 4
}
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