537 lines
17 KiB
Python
537 lines
17 KiB
Python
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# ---------------------------------------------------------------------
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# JSON normalization routines
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from __future__ import annotations
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from collections import (
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abc,
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defaultdict,
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)
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import copy
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import sys
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from typing import (
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Any,
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DefaultDict,
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Iterable,
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)
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import numpy as np
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from pandas._libs.writers import convert_json_to_lines
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from pandas._typing import (
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IgnoreRaise,
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Scalar,
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)
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import pandas as pd
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from pandas import DataFrame
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def convert_to_line_delimits(s: str) -> str:
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"""
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Helper function that converts JSON lists to line delimited JSON.
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"""
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# Determine we have a JSON list to turn to lines otherwise just return the
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# json object, only lists can
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if not s[0] == "[" and s[-1] == "]":
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return s
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s = s[1:-1]
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return convert_json_to_lines(s)
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def nested_to_record(
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ds,
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prefix: str = "",
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sep: str = ".",
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level: int = 0,
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max_level: int | None = None,
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):
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"""
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A simplified json_normalize
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Converts a nested dict into a flat dict ("record"), unlike json_normalize,
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it does not attempt to extract a subset of the data.
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Parameters
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----------
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ds : dict or list of dicts
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prefix: the prefix, optional, default: ""
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sep : str, default '.'
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Nested records will generate names separated by sep,
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e.g., for sep='.', { 'foo' : { 'bar' : 0 } } -> foo.bar
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level: int, optional, default: 0
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The number of levels in the json string.
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max_level: int, optional, default: None
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The max depth to normalize.
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Returns
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-------
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d - dict or list of dicts, matching `ds`
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Examples
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--------
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>>> nested_to_record(
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... dict(flat1=1, dict1=dict(c=1, d=2), nested=dict(e=dict(c=1, d=2), d=2))
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... )
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{\
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'flat1': 1, \
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'dict1.c': 1, \
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'dict1.d': 2, \
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'nested.e.c': 1, \
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'nested.e.d': 2, \
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'nested.d': 2\
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}
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"""
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singleton = False
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if isinstance(ds, dict):
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ds = [ds]
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singleton = True
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new_ds = []
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for d in ds:
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new_d = copy.deepcopy(d)
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for k, v in d.items():
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# each key gets renamed with prefix
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if not isinstance(k, str):
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k = str(k)
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if level == 0:
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newkey = k
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else:
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newkey = prefix + sep + k
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# flatten if type is dict and
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# current dict level < maximum level provided and
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# only dicts gets recurse-flattened
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# only at level>1 do we rename the rest of the keys
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if not isinstance(v, dict) or (
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max_level is not None and level >= max_level
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):
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if level != 0: # so we skip copying for top level, common case
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v = new_d.pop(k)
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new_d[newkey] = v
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continue
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v = new_d.pop(k)
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new_d.update(nested_to_record(v, newkey, sep, level + 1, max_level))
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new_ds.append(new_d)
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if singleton:
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return new_ds[0]
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return new_ds
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def _normalise_json(
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data: Any,
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key_string: str,
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normalized_dict: dict[str, Any],
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separator: str,
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) -> dict[str, Any]:
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"""
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Main recursive function
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Designed for the most basic use case of pd.json_normalize(data)
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intended as a performance improvement, see #15621
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Parameters
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----------
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data : Any
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Type dependent on types contained within nested Json
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key_string : str
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New key (with separator(s) in) for data
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normalized_dict : dict
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The new normalized/flattened Json dict
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separator : str, default '.'
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Nested records will generate names separated by sep,
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e.g., for sep='.', { 'foo' : { 'bar' : 0 } } -> foo.bar
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"""
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if isinstance(data, dict):
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for key, value in data.items():
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new_key = f"{key_string}{separator}{key}"
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if not key_string:
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if sys.version_info < (3, 9):
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from pandas.util._str_methods import removeprefix
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new_key = removeprefix(new_key, separator)
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else:
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new_key = new_key.removeprefix(separator)
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_normalise_json(
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data=value,
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key_string=new_key,
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normalized_dict=normalized_dict,
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separator=separator,
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)
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else:
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normalized_dict[key_string] = data
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return normalized_dict
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def _normalise_json_ordered(data: dict[str, Any], separator: str) -> dict[str, Any]:
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"""
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Order the top level keys and then recursively go to depth
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Parameters
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----------
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data : dict or list of dicts
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separator : str, default '.'
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Nested records will generate names separated by sep,
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e.g., for sep='.', { 'foo' : { 'bar' : 0 } } -> foo.bar
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Returns
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-------
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dict or list of dicts, matching `normalised_json_object`
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"""
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top_dict_ = {k: v for k, v in data.items() if not isinstance(v, dict)}
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nested_dict_ = _normalise_json(
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data={k: v for k, v in data.items() if isinstance(v, dict)},
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key_string="",
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normalized_dict={},
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separator=separator,
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)
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return {**top_dict_, **nested_dict_}
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def _simple_json_normalize(
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ds: dict | list[dict],
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sep: str = ".",
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) -> dict | list[dict] | Any:
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"""
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A optimized basic json_normalize
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Converts a nested dict into a flat dict ("record"), unlike
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json_normalize and nested_to_record it doesn't do anything clever.
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But for the most basic use cases it enhances performance.
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E.g. pd.json_normalize(data)
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Parameters
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----------
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ds : dict or list of dicts
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sep : str, default '.'
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Nested records will generate names separated by sep,
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e.g., for sep='.', { 'foo' : { 'bar' : 0 } } -> foo.bar
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Returns
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-------
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frame : DataFrame
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d - dict or list of dicts, matching `normalised_json_object`
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Examples
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--------
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>>> _simple_json_normalize(
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... {
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... "flat1": 1,
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... "dict1": {"c": 1, "d": 2},
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... "nested": {"e": {"c": 1, "d": 2}, "d": 2},
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... }
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... )
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{\
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'flat1': 1, \
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'dict1.c': 1, \
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'dict1.d': 2, \
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'nested.e.c': 1, \
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'nested.e.d': 2, \
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'nested.d': 2\
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}
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"""
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normalised_json_object = {}
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# expect a dictionary, as most jsons are. However, lists are perfectly valid
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if isinstance(ds, dict):
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normalised_json_object = _normalise_json_ordered(data=ds, separator=sep)
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elif isinstance(ds, list):
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normalised_json_list = [_simple_json_normalize(row, sep=sep) for row in ds]
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return normalised_json_list
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return normalised_json_object
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def json_normalize(
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data: dict | list[dict],
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record_path: str | list | None = None,
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meta: str | list[str | list[str]] | None = None,
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meta_prefix: str | None = None,
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record_prefix: str | None = None,
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errors: IgnoreRaise = "raise",
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sep: str = ".",
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max_level: int | None = None,
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) -> DataFrame:
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"""
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Normalize semi-structured JSON data into a flat table.
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Parameters
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----------
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data : dict or list of dicts
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Unserialized JSON objects.
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record_path : str or list of str, default None
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Path in each object to list of records. If not passed, data will be
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assumed to be an array of records.
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meta : list of paths (str or list of str), default None
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Fields to use as metadata for each record in resulting table.
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meta_prefix : str, default None
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If True, prefix records with dotted (?) path, e.g. foo.bar.field if
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meta is ['foo', 'bar'].
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record_prefix : str, default None
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If True, prefix records with dotted (?) path, e.g. foo.bar.field if
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path to records is ['foo', 'bar'].
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errors : {'raise', 'ignore'}, default 'raise'
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Configures error handling.
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* 'ignore' : will ignore KeyError if keys listed in meta are not
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always present.
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* 'raise' : will raise KeyError if keys listed in meta are not
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always present.
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sep : str, default '.'
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Nested records will generate names separated by sep.
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e.g., for sep='.', {'foo': {'bar': 0}} -> foo.bar.
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max_level : int, default None
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Max number of levels(depth of dict) to normalize.
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if None, normalizes all levels.
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Returns
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-------
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frame : DataFrame
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Normalize semi-structured JSON data into a flat table.
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Examples
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--------
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>>> data = [
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... {"id": 1, "name": {"first": "Coleen", "last": "Volk"}},
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... {"name": {"given": "Mark", "family": "Regner"}},
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... {"id": 2, "name": "Faye Raker"},
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... ]
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>>> pd.json_normalize(data)
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id name.first name.last name.given name.family name
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0 1.0 Coleen Volk NaN NaN NaN
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1 NaN NaN NaN Mark Regner NaN
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2 2.0 NaN NaN NaN NaN Faye Raker
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>>> data = [
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... {
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... "id": 1,
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... "name": "Cole Volk",
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... "fitness": {"height": 130, "weight": 60},
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... },
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... {"name": "Mark Reg", "fitness": {"height": 130, "weight": 60}},
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... {
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... "id": 2,
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... "name": "Faye Raker",
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... "fitness": {"height": 130, "weight": 60},
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... },
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... ]
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>>> pd.json_normalize(data, max_level=0)
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id name fitness
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0 1.0 Cole Volk {'height': 130, 'weight': 60}
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1 NaN Mark Reg {'height': 130, 'weight': 60}
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2 2.0 Faye Raker {'height': 130, 'weight': 60}
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Normalizes nested data up to level 1.
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>>> data = [
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... {
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... "id": 1,
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... "name": "Cole Volk",
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... "fitness": {"height": 130, "weight": 60},
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... },
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... {"name": "Mark Reg", "fitness": {"height": 130, "weight": 60}},
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... {
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... "id": 2,
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... "name": "Faye Raker",
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... "fitness": {"height": 130, "weight": 60},
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... },
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... ]
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>>> pd.json_normalize(data, max_level=1)
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id name fitness.height fitness.weight
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0 1.0 Cole Volk 130 60
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1 NaN Mark Reg 130 60
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2 2.0 Faye Raker 130 60
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>>> data = [
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... {
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... "state": "Florida",
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... "shortname": "FL",
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... "info": {"governor": "Rick Scott"},
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... "counties": [
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... {"name": "Dade", "population": 12345},
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... {"name": "Broward", "population": 40000},
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... {"name": "Palm Beach", "population": 60000},
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... ],
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... },
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... {
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... "state": "Ohio",
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... "shortname": "OH",
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... "info": {"governor": "John Kasich"},
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... "counties": [
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... {"name": "Summit", "population": 1234},
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... {"name": "Cuyahoga", "population": 1337},
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... ],
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... },
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... ]
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>>> result = pd.json_normalize(
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... data, "counties", ["state", "shortname", ["info", "governor"]]
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... )
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>>> result
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name population state shortname info.governor
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0 Dade 12345 Florida FL Rick Scott
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1 Broward 40000 Florida FL Rick Scott
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2 Palm Beach 60000 Florida FL Rick Scott
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3 Summit 1234 Ohio OH John Kasich
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4 Cuyahoga 1337 Ohio OH John Kasich
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>>> data = {"A": [1, 2]}
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>>> pd.json_normalize(data, "A", record_prefix="Prefix.")
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Prefix.0
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0 1
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1 2
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Returns normalized data with columns prefixed with the given string.
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"""
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def _pull_field(
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js: dict[str, Any], spec: list | str, extract_record: bool = False
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) -> Scalar | Iterable:
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"""Internal function to pull field"""
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||
|
|
result = js
|
||
|
|
try:
|
||
|
|
if isinstance(spec, list):
|
||
|
|
for field in spec:
|
||
|
|
if result is None:
|
||
|
|
raise KeyError(field)
|
||
|
|
result = result[field]
|
||
|
|
else:
|
||
|
|
result = result[spec]
|
||
|
|
except KeyError as e:
|
||
|
|
if extract_record:
|
||
|
|
raise KeyError(
|
||
|
|
f"Key {e} not found. If specifying a record_path, all elements of "
|
||
|
|
f"data should have the path."
|
||
|
|
) from e
|
||
|
|
if errors == "ignore":
|
||
|
|
return np.nan
|
||
|
|
else:
|
||
|
|
raise KeyError(
|
||
|
|
f"Key {e} not found. To replace missing values of {e} with "
|
||
|
|
f"np.nan, pass in errors='ignore'"
|
||
|
|
) from e
|
||
|
|
|
||
|
|
return result
|
||
|
|
|
||
|
|
def _pull_records(js: dict[str, Any], spec: list | str) -> list:
|
||
|
|
"""
|
||
|
|
Internal function to pull field for records, and similar to
|
||
|
|
_pull_field, but require to return list. And will raise error
|
||
|
|
if has non iterable value.
|
||
|
|
"""
|
||
|
|
result = _pull_field(js, spec, extract_record=True)
|
||
|
|
|
||
|
|
# GH 31507 GH 30145, GH 26284 if result is not list, raise TypeError if not
|
||
|
|
# null, otherwise return an empty list
|
||
|
|
if not isinstance(result, list):
|
||
|
|
if pd.isnull(result):
|
||
|
|
result = []
|
||
|
|
else:
|
||
|
|
raise TypeError(
|
||
|
|
f"{js} has non list value {result} for path {spec}. "
|
||
|
|
"Must be list or null."
|
||
|
|
)
|
||
|
|
return result
|
||
|
|
|
||
|
|
if isinstance(data, list) and not data:
|
||
|
|
return DataFrame()
|
||
|
|
elif isinstance(data, dict):
|
||
|
|
# A bit of a hackjob
|
||
|
|
data = [data]
|
||
|
|
elif isinstance(data, abc.Iterable) and not isinstance(data, str):
|
||
|
|
# GH35923 Fix pd.json_normalize to not skip the first element of a
|
||
|
|
# generator input
|
||
|
|
data = list(data)
|
||
|
|
else:
|
||
|
|
raise NotImplementedError
|
||
|
|
|
||
|
|
# check to see if a simple recursive function is possible to
|
||
|
|
# improve performance (see #15621) but only for cases such
|
||
|
|
# as pd.Dataframe(data) or pd.Dataframe(data, sep)
|
||
|
|
if (
|
||
|
|
record_path is None
|
||
|
|
and meta is None
|
||
|
|
and meta_prefix is None
|
||
|
|
and record_prefix is None
|
||
|
|
and max_level is None
|
||
|
|
):
|
||
|
|
return DataFrame(_simple_json_normalize(data, sep=sep))
|
||
|
|
|
||
|
|
if record_path is None:
|
||
|
|
if any([isinstance(x, dict) for x in y.values()] for y in data):
|
||
|
|
# naive normalization, this is idempotent for flat records
|
||
|
|
# and potentially will inflate the data considerably for
|
||
|
|
# deeply nested structures:
|
||
|
|
# {VeryLong: { b: 1,c:2}} -> {VeryLong.b:1 ,VeryLong.c:@}
|
||
|
|
#
|
||
|
|
# TODO: handle record value which are lists, at least error
|
||
|
|
# reasonably
|
||
|
|
data = nested_to_record(data, sep=sep, max_level=max_level)
|
||
|
|
return DataFrame(data)
|
||
|
|
elif not isinstance(record_path, list):
|
||
|
|
record_path = [record_path]
|
||
|
|
|
||
|
|
if meta is None:
|
||
|
|
meta = []
|
||
|
|
elif not isinstance(meta, list):
|
||
|
|
meta = [meta]
|
||
|
|
|
||
|
|
_meta = [m if isinstance(m, list) else [m] for m in meta]
|
||
|
|
|
||
|
|
# Disastrously inefficient for now
|
||
|
|
records: list = []
|
||
|
|
lengths = []
|
||
|
|
|
||
|
|
meta_vals: DefaultDict = defaultdict(list)
|
||
|
|
meta_keys = [sep.join(val) for val in _meta]
|
||
|
|
|
||
|
|
def _recursive_extract(data, path, seen_meta, level: int = 0) -> None:
|
||
|
|
if isinstance(data, dict):
|
||
|
|
data = [data]
|
||
|
|
if len(path) > 1:
|
||
|
|
for obj in data:
|
||
|
|
for val, key in zip(_meta, meta_keys):
|
||
|
|
if level + 1 == len(val):
|
||
|
|
seen_meta[key] = _pull_field(obj, val[-1])
|
||
|
|
|
||
|
|
_recursive_extract(obj[path[0]], path[1:], seen_meta, level=level + 1)
|
||
|
|
else:
|
||
|
|
for obj in data:
|
||
|
|
recs = _pull_records(obj, path[0])
|
||
|
|
recs = [
|
||
|
|
nested_to_record(r, sep=sep, max_level=max_level)
|
||
|
|
if isinstance(r, dict)
|
||
|
|
else r
|
||
|
|
for r in recs
|
||
|
|
]
|
||
|
|
|
||
|
|
# For repeating the metadata later
|
||
|
|
lengths.append(len(recs))
|
||
|
|
for val, key in zip(_meta, meta_keys):
|
||
|
|
if level + 1 > len(val):
|
||
|
|
meta_val = seen_meta[key]
|
||
|
|
else:
|
||
|
|
meta_val = _pull_field(obj, val[level:])
|
||
|
|
meta_vals[key].append(meta_val)
|
||
|
|
records.extend(recs)
|
||
|
|
|
||
|
|
_recursive_extract(data, record_path, {}, level=0)
|
||
|
|
|
||
|
|
result = DataFrame(records)
|
||
|
|
|
||
|
|
if record_prefix is not None:
|
||
|
|
result = result.rename(columns=lambda x: f"{record_prefix}{x}")
|
||
|
|
|
||
|
|
# Data types, a problem
|
||
|
|
for k, v in meta_vals.items():
|
||
|
|
if meta_prefix is not None:
|
||
|
|
k = meta_prefix + k
|
||
|
|
|
||
|
|
if k in result:
|
||
|
|
raise ValueError(
|
||
|
|
f"Conflicting metadata name {k}, need distinguishing prefix "
|
||
|
|
)
|
||
|
|
result[k] = np.array(v, dtype=object).repeat(lengths)
|
||
|
|
return result
|