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{
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"source": [
"![Logo 1](https://git.wmi.amu.edu.pl/AITech/Szablon/raw/branch/master/Logotyp_AITech1.jpg)\n",
"<div class=\"alert alert-block alert-info\">\n",
"<h1> Inżynieria uczenia maszynowego </h1>\n",
"<h2> 10. <i>DVC</i> [laboratoria]</h2> \n",
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"<h3> Tomasz Ziętkiewicz (2022)</h3>\n",
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"</div>\n",
"\n",
"![Logo 2](https://git.wmi.amu.edu.pl/AITech/Szablon/raw/branch/master/Logotyp_AITech2.jpg)"
]
},
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{
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"metadata": {
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"source": [
"<img src=\"img/expcontrol/dvc-logo.png\">"
]
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{
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"source": [
"## DVC - Data Version Control\n",
"- [dvc.org](https://dvc.org/)\n",
"- \"Version Control System for Machine Learning Projects\" (System kontroli wersji dla projektów uczenia maszynowego)\n",
"- Open Source\n",
"- Umożliwia:\n",
" - wersjonowanie danych i modeli. \"Git dla danych i modeli\"\n",
" - budowanie potoków (\"pipeline\") definiujących jak budować/trenować/ewaluować modele. \"Makefile dla uczenia maszynowego\"\n",
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" - śledzenie, porównywanie metryk i parametrów\n",
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"- ściśle zintegowany z gitem\n",
"- działa niezależnie od używanego języka/bibliotek i systemu operacyjnego\n",
"- 5-minutowe wprowadzenie: https://www.youtube.com/watch?v=UbL7VUpv1Bs&t=197s"
]
},
{
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"source": [
"## Instalacja i inicjalizacja\n",
" - https://dvc.org/doc/install\n",
" - ```pip(x) install dvc``` albo:\n",
" - ```conda install dvc```"
]
},
{
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"Collecting urllib3>=1.24.1 (from dulwich>=0.20.23->dvc)\n",
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"Collecting mailchecker<5.0.0,>=4.1.0 (from python-benedict>=0.24.2->dvc)\n",
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"Collecting phonenumbers<9.0.0,>=8.12.0 (from python-benedict>=0.24.2->dvc)\n",
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" Downloading https://files.pythonhosted.org/packages/48/19/f2090f7dad41e225c7f2326e4cfe6fff49e57dedb5b53636c9551f86b069/cached_property-1.5.2-py2.py3-none-any.whl\n",
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"Collecting yarl<2.0,>=1.0 (from aiohttp; extra == \"http\"->fsspec[http]>=2021.10.0->dvc)\n",
" Downloading https://files.pythonhosted.org/packages/fa/cb/8791922f5ec97b9ebec516d062c0e113da963568ffe2c7c04d8187ab7cc3/yarl-1.7.2-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (270kB)\n",
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"\u001b[?25hCollecting idna-ssl>=1.0; python_version < \"3.7\" (from aiohttp; extra == \"http\"->fsspec[http]>=2021.10.0->dvc)\n",
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"Collecting frozenlist>=1.1.1 (from aiohttp; extra == \"http\"->fsspec[http]>=2021.10.0->dvc)\n",
" Downloading https://files.pythonhosted.org/packages/51/3f/f67395ff0090b9f2835838a1f61c3e840baac70fd65bae762095dead48b2/frozenlist-1.2.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (191kB)\n",
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"\u001b[?25hCollecting async-timeout<5.0,>=4.0.0a3 (from aiohttp; extra == \"http\"->fsspec[http]>=2021.10.0->dvc)\n",
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"Collecting aiosignal>=1.1.2 (from aiohttp; extra == \"http\"->fsspec[http]>=2021.10.0->dvc)\n",
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"Collecting attrs>=17.3.0 (from aiohttp; extra == \"http\"->fsspec[http]>=2021.10.0->dvc)\n",
" Using cached https://files.pythonhosted.org/packages/be/be/7abce643bfdf8ca01c48afa2ddf8308c2308b0c3b239a44e57d020afa0ef/attrs-21.4.0-py2.py3-none-any.whl\n",
"Collecting multidict<7.0,>=4.5 (from aiohttp; extra == \"http\"->fsspec[http]>=2021.10.0->dvc)\n",
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"\u001b[?25hCollecting smmap<6,>=3.0.1 (from gitdb<5,>=4.0.1->gitpython>3->dvc)\n",
" Using cached https://files.pythonhosted.org/packages/6d/01/7caa71608bc29952ae09b0be63a539e50d2484bc37747797a66a60679856/smmap-5.0.0-py3-none-any.whl\n",
"Collecting text-unidecode>=1.3 (from python-slugify<7.0.0,>=6.0.1->python-benedict>=0.24.2->dvc)\n",
" Downloading https://files.pythonhosted.org/packages/a6/a5/c0b6468d3824fe3fde30dbb5e1f687b291608f9473681bbf7dabbf5a87d7/text_unidecode-1.3-py2.py3-none-any.whl (78kB)\n",
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"\u001b[?25hCollecting wcwidth (from ftfy<7.0.0,>=6.0.0->python-benedict>=0.24.2->dvc)\n",
" Using cached https://files.pythonhosted.org/packages/59/7c/e39aca596badaf1b78e8f547c807b04dae603a433d3e7a7e04d67f2ef3e5/wcwidth-0.2.5-py2.py3-none-any.whl\n",
"Collecting pycparser (from cffi>=1.4.0->pygit2<1.7,>=1.5.0; python_version < \"3.7\"->dvc)\n",
" Using cached https://files.pythonhosted.org/packages/62/d5/5f610ebe421e85889f2e55e33b7f9a6795bd982198517d912eb1c76e1a53/pycparser-2.21-py2.py3-none-any.whl\n",
"Building wheels for collected packages: nanotime, flufl.lock, psutil, configobj, pygtrie, dulwich, pygit2, contextvars, atpublic, mailchecker, ftfy, future, idna-ssl\n",
" Running setup.py bdist_wheel for nanotime ... \u001b[?25ldone\n",
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/41/99/17/7135f635215e1f61e906295afd11f4f791cfe4ab45f3bfdca2\n",
" Running setup.py bdist_wheel for flufl.lock ... \u001b[?25ldone\n",
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/4f/51/d7/f65a7b7f37da7594f7021b122fe677187667ad21f1171d2514\n",
" Running setup.py bdist_wheel for psutil ... \u001b[?25ldone\n",
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/6e/94/8f/ef906811f8dcf6824a9747df0381615be48d723073fb59a317\n",
" Running setup.py bdist_wheel for configobj ... \u001b[?25ldone\n",
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/f1/e4/16/4981ca97c2d65106b49861e0b35e2660695be7219a2d351ee0\n",
" Running setup.py bdist_wheel for pygtrie ... \u001b[?25ldone\n",
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/db/57/91/73782136379fe419036c5ec0e4070d8b3a35f2a36bd6a94ed8\n",
" Running setup.py bdist_wheel for dulwich ... \u001b[?25ldone\n",
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/63/28/8c/0bbff7d6e30f3fc523639b000b33aba9155152e9eb23689ba0\n",
" Running setup.py bdist_wheel for pygit2 ... \u001b[?25lerror\n",
" Complete output from command /usr/bin/python3 -u -c \"import setuptools, tokenize;__file__='/tmp/pip-build-hr8mtrcf/pygit2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" bdist_wheel -d /tmp/tmp4kyicel3pip-wheel- --python-tag cp36:\n",
" running bdist_wheel\n",
" running build\n",
" running build_py\n",
" creating build\n",
" creating build/lib.linux-x86_64-3.6\n",
" creating build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/__init__.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/_build.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/_run.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/blame.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/callbacks.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/config.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/credentials.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/errors.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/ffi.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/index.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/packbuilder.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/refspec.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/remote.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/repository.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/settings.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/submodule.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/utils.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" creating build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/attr.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/blame.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/buffer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/callbacks.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/checkout.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/clone.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/common.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/config.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/describe.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/diff.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/errors.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/graph.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/index.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/indexer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/merge.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/net.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/oid.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/pack.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/proxy.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/refspec.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/remote.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/repository.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/revert.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/stash.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/strarray.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/submodule.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/transport.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/types.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" running build_ext\n",
" generating cffi module 'build/temp.linux-x86_64-3.6/pygit2._libgit2.c'\n",
" creating build/temp.linux-x86_64-3.6\n",
" building 'pygit2._pygit2' extension\n",
" creating build/temp.linux-x86_64-3.6/src\n",
" x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/usr/include/python3.6m -c src/blob.c -o build/temp.linux-x86_64-3.6/src/blob.o\n",
" In file included from src/blob.c:30:0:\n",
" src/blob.h:33:10: fatal error: git2.h: No such file or directory\n",
" #include <git2.h>\n",
" ^~~~~~~~\n",
" compilation terminated.\n",
" error: command 'x86_64-linux-gnu-gcc' failed with exit status 1\n",
" \n",
" ----------------------------------------\n",
"\u001b[31m Failed building wheel for pygit2\u001b[0m\n",
"\u001b[?25h Running setup.py clean for pygit2\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
" Running setup.py bdist_wheel for contextvars ... \u001b[?25ldone\n",
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/a5/7d/68/1ebae2668bda2228686e3c1cf16f2c2384cea6e9334ad5f6de\n",
" Running setup.py bdist_wheel for atpublic ... \u001b[?25ldone\n",
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/33/25/82/57d46b60a048f8e30b31f10497539498a3b826c78e2433c2d4\n",
" Running setup.py bdist_wheel for mailchecker ... \u001b[?25ldone\n",
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/fd/e1/e7/804e77a70eac7103bdba2f4b3e1eba36840b38554a4b8152c8\n",
" Running setup.py bdist_wheel for ftfy ... \u001b[?25ldone\n",
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/99/2c/e6/109c8a28fef7a443f67ba58df21fe1d0067ac3322e75e6b0b7\n",
" Running setup.py bdist_wheel for future ... \u001b[?25ldone\n",
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/8b/99/a0/81daf51dcd359a9377b110a8a886b3895921802d2fc1b2397e\n",
" Running setup.py bdist_wheel for idna-ssl ... \u001b[?25ldone\n",
"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/d3/00/b3/32d613e19e08a739751dd6bf998cfed277728f8b2127ad4eb7\n",
"Successfully built nanotime flufl.lock psutil configobj pygtrie dulwich contextvars atpublic mailchecker ftfy future idna-ssl\n",
"Failed to build pygit2\n",
"Installing collected packages: setuptools, colorama, dictdiffer, ply, nanotime, asynctest, idna, multidict, typing-extensions, yarl, idna-ssl, frozenlist, async-timeout, aiosignal, charset-normalizer, attrs, aiohttp, certifi, urllib3, requests, fsspec, decorator, networkx, atpublic, flufl.lock, shtab, shortuuid, smmap, gitdb, gitpython, zipp, importlib-resources, tqdm, zc.lockfile, dataclasses, commonmark, pygments, rich, aiohttp-retry, voluptuous, psutil, six, importlib-metadata, flatten-dict, configobj, pygtrie, tabulate, dulwich, appdirs, ruamel.yaml.clib, ruamel.yaml, text-unidecode, python-slugify, python-fsutil, mailchecker, pyyaml, toml, xmltodict, phonenumbers, wcwidth, ftfy, python-dateutil, python-benedict, future, pyparsing, grandalf, dpath, pycparser, cffi, cached-property, pygit2, pyasn1, pathspec, immutables, contextvars, distro, packaging, diskcache, pydot, funcy, dvc\n",
" Running setup.py install for pygit2 ... \u001b[?25lerror\n",
" Complete output from command /usr/bin/python3 -u -c \"import setuptools, tokenize;__file__='/tmp/pip-build-hr8mtrcf/pygit2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" install --record /tmp/pip-6tml5js1-record/install-record.txt --single-version-externally-managed --compile --user --prefix=:\n",
" running install\n",
" /home/tomek/.local/lib/python3.6/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.\n",
" setuptools.SetuptoolsDeprecationWarning,\n",
" running build\n",
" running build_py\n",
" creating build\n",
" creating build/lib.linux-x86_64-3.6\n",
" creating build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/__init__.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/_build.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/_run.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/blame.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/callbacks.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/config.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/credentials.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/errors.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/ffi.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/index.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/packbuilder.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/refspec.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/remote.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/repository.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/settings.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/submodule.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" copying pygit2/utils.py -> build/lib.linux-x86_64-3.6/pygit2\n",
" creating build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/attr.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/blame.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/buffer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/callbacks.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/checkout.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/clone.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/common.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/config.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/describe.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/diff.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/errors.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/graph.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/index.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/indexer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/merge.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/net.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/oid.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/pack.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/proxy.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/refspec.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/remote.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/repository.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/revert.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/stash.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/strarray.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/submodule.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/transport.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" copying pygit2/decl/types.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n",
" running build_ext\n",
" generating cffi module 'build/temp.linux-x86_64-3.6/pygit2._libgit2.c'\n",
" creating build/temp.linux-x86_64-3.6\n",
" building 'pygit2._pygit2' extension\n",
" creating build/temp.linux-x86_64-3.6/src\n",
" x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/usr/include/python3.6m -c src/blob.c -o build/temp.linux-x86_64-3.6/src/blob.o\n",
" In file included from src/blob.c:30:0:\n",
" src/blob.h:33:10: fatal error: git2.h: No such file or directory\n",
" #include <git2.h>\n",
" ^~~~~~~~\n",
" compilation terminated.\n",
" error: command 'x86_64-linux-gnu-gcc' failed with exit status 1\n",
" \n",
" ----------------------------------------\n",
"\u001b[31mCommand \"/usr/bin/python3 -u -c \"import setuptools, tokenize;__file__='/tmp/pip-build-hr8mtrcf/pygit2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" install --record /tmp/pip-6tml5js1-record/install-record.txt --single-version-externally-managed --compile --user --prefix=\" failed with error code 1 in /tmp/pip-build-hr8mtrcf/pygit2/\u001b[0m\n",
"\u001b[?25h"
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]
}
],
"source": [
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"!pip3 install dvc"
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]
},
{
"cell_type": "markdown",
"id": "20975d62",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"Stwórzmy katalog, w którym będziemy przechowywać nasz projekt:"
]
},
{
"cell_type": "code",
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"execution_count": 1,
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"id": "aae59ec2",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [],
"source": [
"!mkdir -p IUM_10/sample-ml-project"
]
},
{
"cell_type": "code",
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"execution_count": 1,
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"id": "1e522a93",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
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"/home/tomek/repos/aitech-ium/IUM_10/sample-ml-project\n"
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]
}
],
"source": [
"#Jupyter notebook magic https://ipython.readthedocs.io/en/stable/interactive/magics.html#magic-cd\n",
"%cd \"IUM_10/sample-ml-project\""
]
},
{
"cell_type": "markdown",
"id": "199c0d92",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"Inicjalizujemy puste repozytorium Git (możemy też pominąć ten krok i działać w istniejącym już repozytorium)"
]
},
{
"cell_type": "code",
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"execution_count": 3,
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"id": "c13c525b",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
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"Reinitialized existing Git repository in /home/tomek/repos/aitech-ium/IUM_10/sample-ml-project/.git/\r\n"
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]
}
],
"source": [
"!git init"
]
},
{
"cell_type": "markdown",
"id": "c7155369",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"Teraz inicjalizujemy repozytorium DVC:"
]
},
{
"cell_type": "code",
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"execution_count": 4,
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"id": "44f28226",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
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"\u001b[31mERROR\u001b[39m: failed to initiate DVC - '.dvc' exists. Use `-f` to force.\n",
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"\u001b[0m"
]
}
],
"source": [
"!dvc init"
]
},
{
"cell_type": "markdown",
"id": "00bc72ed",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"Zobaczmy jakie pliki dodał (również do repozytorium git) DVC.\n",
"Ich opis znajdziemy tutaj: https://dvc.org/doc/user-guide/project-structure/internal-files"
]
},
{
"cell_type": "code",
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"execution_count": 5,
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"id": "d1aefe16",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"On branch master\r\n",
"Changes to be committed:\r\n",
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" (use \"git restore --staged <file>...\" to unstage)\r\n",
"\t\u001b[32mmodified: .dvc/config\u001b[m\r\n",
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"\r\n"
]
}
],
"source": [
"!git status"
]
},
{
"cell_type": "markdown",
"id": "72e0a272",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"Możemy teraz zacommitować zmiany w git:"
]
},
{
"cell_type": "code",
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"execution_count": 6,
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"id": "59780e99",
"metadata": {
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"scrolled": true,
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"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
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"[master (root-commit) d00d0ac] Initial commit\r\n",
" 3 files changed, 6 insertions(+)\r\n",
" create mode 100644 .dvc/.gitignore\r\n",
" create mode 100644 .dvc/config\r\n",
" create mode 100644 .dvcignore\r\n"
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]
}
],
"source": [
"!git commit -m \"Initial commit\""
]
},
{
"cell_type": "markdown",
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"id": "3d4ce1cb",
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"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## Śledzenie plików za pomocą DVC\n",
" - dużymi plikami, takimi jak plikami z danymi wejściowymi czy plikami modeli, trudno zarządza się za pomocą gita, ze względu na problemy z:\n",
" - wydajnością\n",
" - przestrzenią w repozytorium\n",
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" - ograniczenia ze strony serwisu (np. [limit 100 MB na plik w Github](https://docs.github.com/en/repositories/working-with-files/managing-large-files/about-large-files-on-github))\n",
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" - Git posiada rozszerzenie [lfs(Large File Storage)](https://git-lfs.github.com/), które stanowi pewne rozwiązanie tego problemu. Same pliki przechowywane są na specjalnym zdalnym serwerze, w repozytorium przechowywane są jedynie odnośniki do tych plików i pewne metadane"
]
},
{
"cell_type": "markdown",
"id": "dd8e529b",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
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" - DVC proponuje podobne podejście, ale:\n",
" - pliki mogą być przechowywane na niemal dowolnym serwerze, również lokalnie\n",
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" - brak limitu wielkości plików (w Git-LFS na Github [limit 2GB](https://docs.github.com/en/repositories/working-with-files/managing-large-files/about-git-large-file-storage))\n",
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" - DVC zapewnia dodatkowe narzędzie umożliwiające śledzenie plików i ich powiązań z wynikami eksperymentów\n",
" - więcej, patrz [tutaj](https://dvc.org/doc/user-guide/related-technologies)"
]
},
{
"cell_type": "markdown",
"id": "a8861abe",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"Przygotujmy przykładowe dane, pobierając je z Kaggle:"
]
},
{
"cell_type": "code",
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"execution_count": 6,
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"id": "f05ece1b",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
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"Downloading iris.zip to /home/tomek/repos/aitech-ium/IUM_10/sample-ml-project\n",
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" 0%| | 0.00/3.60k [00:00<?, ?B/s]\n",
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"100%|██████████████████████████████████████| 3.60k/3.60k [00:00<00:00, 2.10MB/s]\n",
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"Archive: iris.zip\n",
" inflating: Iris.csv \n",
" inflating: database.sqlite \n"
]
}
],
"source": [
"!kaggle datasets download -d uciml/iris\n",
"!unzip -o iris.zip\n",
"!rm database.sqlite iris.zip\n",
"!mkdir -p data\n",
"!mv Iris.csv data/"
]
},
{
"cell_type": "markdown",
"id": "adb9a522",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"Teraz dodamy plik(i) z danymi do DVC:"
]
},
{
"cell_type": "code",
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"execution_count": 7,
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"id": "74d182c7",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
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"\u001b[2K\u001b[32m⠋\u001b[0m Checking graph \u001b[32m⠋\u001b[0m Checking graph\n",
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"Adding... \n",
"!\u001b[A\n",
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" 0% Checking cache in '/home/tomek/repos/aitech-ium/IUM_10/sample-ml-project/.d\u001b[A\n",
" \u001b[A\n",
"!\u001b[A\n",
" 0%| |Transferring 0/1 [00:00<?, ?file/s]\u001b[A\n",
" \u001b[A\n",
"!\u001b[A\n",
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" 0%| |.ZfWsiEaSUu83Mc7QqhDoTS.tmp 0.00/? [00:00<?, ?B/s]\u001b[A\n",
" 0%| |.ZfWsiEaSUu83Mc7QqhDoTS.tmp 0.00/4.00 [00:00<?, ?B/s]\u001b[A\n",
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" \u001b[A\n",
"!\u001b[A\n",
" 0%| |7820ef0af287ff346c5cabfb4c612c 0.00/? [00:00<?, ?B/s]\u001b[A\n",
" 0%| |7820ef0af287ff346c5cabfb4c612c 0.00/4.99k [00:00<?, ?B/s]\u001b[A\n",
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"100% Adding...|████████████████████████████████████████|1/1 [00:00, 5.92file/s]\u001b[A\n",
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"\n",
"To track the changes with git, run:\n",
"\n",
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" git add data/Iris.csv.dvc\n",
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"\n",
"To enable auto staging, run:\n",
"\n",
"\tdvc config core.autostage true\n",
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"\u001b[0m"
]
}
],
"source": [
"!dvc add data/Iris.csv"
]
},
{
"cell_type": "markdown",
"id": "72c6b5d0",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
" - DVC utworzył plik `data/Iris.csv.dvc` i dadał oryginalny plik do `.gitignore`\n",
" - W repozytorium będzie obecny tylko plik `*.dvc`, zawierający odnośnik do prawdziwego pliku"
]
},
{
"cell_type": "code",
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"execution_count": 8,
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"id": "74d54652",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"On branch master\r\n",
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"Changes to be committed:\r\n",
" (use \"git restore --staged <file>...\" to unstage)\r\n",
"\t\u001b[32mmodified: .dvc/config\u001b[m\r\n",
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"\r\n",
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"Changes not staged for commit:\r\n",
" (use \"git add <file>...\" to update what will be committed)\r\n",
" (use \"git restore <file>...\" to discard changes in working directory)\r\n",
"\t\u001b[31mmodified: data/Iris.csv.dvc\u001b[m\r\n",
"\r\n"
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]
}
],
"source": [
"!git status -u"
]
},
{
"cell_type": "markdown",
"id": "8589fecf",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"Dodajmy pliki `data/Iris.csv.dvc data/.gitignore` do repozytorium git, zgodnie z sugestią DVC:"
]
},
{
"cell_type": "code",
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"execution_count": 9,
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"id": "460c4a17",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [],
"source": [
"!git add data/Iris.csv.dvc data/.gitignore"
]
},
{
"cell_type": "code",
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"execution_count": 10,
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"id": "80644077",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
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"[master b37a8d8] Dodano dane IRIS (DVC)\r\n",
" 2 files changed, 2 insertions(+), 6 deletions(-)\r\n"
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]
}
],
"source": [
"!git commit -m \"Dodano dane IRIS (DVC)\""
]
},
{
"cell_type": "markdown",
"id": "03899863",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"Plik `*.dvc` zawiera m.in. hash pliku. Więcej o plikach `*.dvc`: [link](https://dvc.org/doc/user-guide/project-structure/dvc-files)"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "8cb2ba7c",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [],
"source": [
"# %load data/Iris.csv.dvc\n",
"outs:\n",
"- md5: 717820ef0af287ff346c5cabfb4c612c\n",
" size: 5107\n",
" path: Iris.csv\n"
]
},
{
"cell_type": "markdown",
"id": "0b421d45",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"Oryginalny plik `Iris.csv` został przeniesiony do katalogu ./dvc/cache/{wartość hash pliku) i podlinkowany z powrotem do oryginalnej lokalizacji. Sposób tworzenia linków może być [różny w zależności od systemu plików](https://dvc.org/doc/user-guide/large-dataset-optimization)."
]
},
{
"cell_type": "code",
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"execution_count": 16,
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"id": "1d471f3a",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"total 8\r\n",
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"-r--r--r-- 1 tomek tomek 5107 Sep 19 2019 7820ef0af287ff346c5cabfb4c612c\r\n"
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]
}
],
"source": [
"!ls -l .dvc/cache/71"
]
},
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{
"cell_type": "code",
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"execution_count": 17,
"id": "f86a5b55",
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"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
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"total 8\r\n",
"-rw-r--r-- 1 tomek tomek 5107 May 29 09:19 Iris.csv\r\n",
"-rw-r--r-- 1 tomek tomek 76 May 29 09:19 Iris.csv.dvc\r\n"
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]
}
],
"source": [
"!ls -l ./data"
]
},
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{
"cell_type": "markdown",
"id": "901e8e90",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## dvc remote\n",
" - żeby wysłać właściwe pliki śledzone przez DVC do zdalnej lokalizacji (z której będą mogłby być pobrane np. przez system CI albo innych użytkowników) musimy mieć skonfigurowaną taką lokazliację\n",
" - służy do tego polecenie [`dvc remote add`](https://dvc.org/doc/command-reference/remote/add)\n",
" - użyjemy lokalnego \"remote\". Tutaj będzie to po prostu utworzony wcześniej katalog `/dvcstore`. Taki katalog istnieje też na naszym Jenkinsie, oczywiście należy go podmontować w Dockerze\n",
" - w realnych zastosowaniach podalibyśmy tutaj ścieżkę do jakiegoś zasobu dostępnego przez inernet jak np. serwer SFTP, ścieżka do AWS S3 itp."
]
},
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{
"cell_type": "markdown",
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"id": "53429521",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
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"source": [
"Obsługiwane typy zdalnych lokalizacji (remotes): https://dvc.org/doc/command-reference/remote/add#supported-storage-types\n",
" - Amazon S3\n",
" - S3-compatible storage\n",
" - Microsoft Azure Blob Storage\n",
" - Google Drive\n",
" - Google Cloud Storage\n",
" - Aliyun OSS\n",
" - SSH\n",
" - HDFS\n",
" - WebHDFS\n",
" - HTTP\n",
" - WebDAV\n",
" - local remote"
]
},
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{
"cell_type": "code",
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"execution_count": 71,
"id": "a16f2bfa",
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"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
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"Setting 'my_local_remote' as a default remote.\n",
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"\u001b[0m"
]
}
],
"source": [
"!dvc remote add -d my_local_remote /dvcstore"
]
},
{
"cell_type": "code",
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"execution_count": 25,
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"id": "9c3deeaf",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"On branch master\r\n",
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"nothing to commit, working tree clean\r\n"
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]
}
],
"source": [
"!git status"
]
},
{
"cell_type": "code",
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"execution_count": 26,
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"id": "899eac7d",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
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"On branch master\r\n",
"nothing to commit, working tree clean\r\n"
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]
}
],
"source": [
"!git add .dvc/config\n",
"!git commit -m \"Added DVC remote\""
]
},
{
"cell_type": "markdown",
"id": "8c556c96",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## dvc push\n",
"Kiedy mamy już skonfigurowany \"remote\" możemy wypchnąć do niego pliki korzystając z polecenia `dvc push`:"
]
},
{